Query= MSMg01no132_a05.b1 MSMg01no132_a05.b1 CHROMAT_FILE:
MSMg01no132_a05.b1 PHD_FILE: MSMg01no132_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:24 2005
(590 letters)
>mm_chr12_25866676_25867665
Length = 990
Score = 996 bits (515), Expect = 0.0
Identities = 568/595 (95%), Gaps = 19/595 (3%)
Strand = Plus / Plus
Query: 4 gaattctacagcctgacct-agctagaaaaag---gttgctggtgagtgagatgtttagg 59
||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 203 gaattctacagcctgaccttagctagaaccagctggttgctggtgagtgagatgtttagg 262
Query: 60 agctctggataagcacgggactttttttttcttttttgttctcactggtgctttgaagaa 119
||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 263 agctctggataagcacggggcatttttttt-------gttctcactggtgctttgaagaa 315
Query: 120 tagttattctggaaatataaaatgtatttaagtgtgtaatggatttagttgtggctatga 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 316 tagttattctggaaatataaaatgtatttaggtgtgtaatggatttagttgtggctatga 375
Query: 180 tcaattaatttgggggg----tgcaggagactgaacctagggtctttacatgctaaccaa 235
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcaattaatttggggggggggtgcaggagactgaacctagggtctttacatgctaaccaa 435
Query: 236 gtaagctgccacttggctacatccctcctccttctgctcattatttaagaaacggtcaat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtaagctgccacttggctacatccctcctccttctgctcattatttaagaaacggtcaat 495
Query: 296 ttgaggtaaagttgctatgccactgagaaaaagctcccaagtgtctgggatcacagacta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttgaggtaaagttgctatgccactgagaaaaagctcccaagtgtctgggatcacagacta 555
Query: 356 caccaccaggcccagttctaatcattgttgttactattattgttattgttattaatgtat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caccaccaggcccagttctaatcattgttgttactattattgttattgttattaatgt-- 613
Query: 416 gttttattttgaatcagggtctcacgtattccatgccagcctggaacttatcttgtaggt 475
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 614 --tttattttgaatcagggtctcacgtatcccacgccagcctggaacttatcttgtaggt 671
Query: 476 agatataatcttgaatttttgaacctctgagctccacttccggtgtgccgagattacagc 535
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 672 agatataatcttgaatttttgaacctctgagctccacttctggtgtgccgagattacagc 731
Query: 536 catgcactaccacacctagcttatacggcactggaacaacccagggctttgttct 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 catgcactaccacacctagcttatacggcactggaacaacccagggctttgttct 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_a05.g1 MSMg01no132_a05.g1 CHROMAT_FILE:
MSMg01no132_a05.g1 PHD_FILE: MSMg01no132_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:25 2005
(541 letters)
>mm_chr12_26016940_26017880
Length = 941
Score = 1046 bits (541), Expect = 0.0
Identities = 541/541 (100%)
Strand = Plus / Minus
Query: 1 ctctgtaacagtgagcaataccatctctggacctggtccttagcctggaggcgtctccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctgtaacagtgagcaataccatctctggacctggtccttagcctggaggcgtctccca 682
Query: 61 ggtagaacaggccctaggaaactaataggatcagatgaaactcccaggaggaggactgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtagaacaggccctaggaaactaataggatcagatgaaactcccaggaggaggactgaa 622
Query: 121 gcagatggcaatttgctaataaccgcgccagctgccagtcttcggagagttgccatgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagatggcaatttgctaataaccgcgccagctgccagtcttcggagagttgccatgagg 562
Query: 181 ctgactccaagctgcagttaaacatctcatttctgtgccctattataatcttgggaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgactccaagctgcagttaaacatctcatttctgtgccctattataatcttgggaaaga 502
Query: 241 accctcagctcatgcgtcgtgtctgtcaagggggagggtgggcgtgacagtcatggttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accctcagctcatgcgtcgtgtctgtcaagggggagggtgggcgtgacagtcatggttgt 442
Query: 301 catatgagacactgccatcagcttatacagcttactcatgtcccccagttgcgtggctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catatgagacactgccatcagcttatacagcttactcatgtcccccagttgcgtggctcc 382
Query: 361 ttctttggccctgcatacacaactctatcaaatgtagtgtctttctccctagtgatgatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctttggccctgcatacacaactctatcaaatgtagtgtctttctccctagtgatgatc 322
Query: 421 ctaacgatggggcggagtcttcagcctatggtactagccctacgtggcatatctctgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaacgatggggcggagtcttcagcctatggtactagccctacgtggcatatctctgcat 262
Query: 481 cattctgccctaatgaacattcagaccctgtctctgaccttaagtggaaaatatgaccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctgccctaatgaacattcagaccctgtctctgaccttaagtggaaaatatgaccaa 202
Query: 541 g 541
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
