BAC Information

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BAC

Clone NameMSMg01-132E13
Chromosome12 (Build37)
Map Location 113,321,145 - 113,434,249
singlet/doubletdoublet
Overlap geneA530050D06Rik, Kif26a
Upstream geneRcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132E13.T7 (MSMg01no132_e13.b1)MSMg01-132E13.TJ (MSMg01no132_e13.g1)
ACCAG339568AG339569
length730722
length of high quality
(start - end)		685 (46 - 730)652 (71 - 722)
definitionCHROMAT_FILE: MSMg01no132_e13.b1 PHD_FILE: MSMg01no132_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:45 2005CHROMAT_FILE: MSMg01no132_e13.g1 PHD_FILE: MSMg01no132_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,321,145 - 113,321,826)(113,433,598 - 113,434,249)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGG
AATTCCAGGGTAGTCACAGCTACACAGAGAAACCCTGTCTAAAAGAGACA
GAGAAAGAGAGACTGATAGAGAGAGACAGAGAGACAGAAAGAGAACTGCT
ACATTACCAATGTCTACAGAAATTAAATAGCAAAATCACTGTAGAATAAG
TTAAGAAATAATGAGGATAAACCTAACAATAATAAAAGAATGGGATTTTT
AAAAAGGGTCCAGAGGAAGGCATGAGAAATGGCTCAGCGGTTAGAAGTAC
TTACTGCTCCCCAGAGCAGCCAGGCTCCTTAGCAGCACCCATGCTGAGTG
ACTCACAGCTACCTGTAACTCCAGCTTCAGGGGATCTGAAACCTTCCTCA
GGTTTCAGAACATACATCTGTACATATGAATGGGACATACGAACACACAC
ACACACACGCACACGCACGCATGCACACCTTAAAAATTAAAGGTGCACAC
AGAGAAAGGAGAGTAAATAAAAAGAGAATAATGTAGGAAAGAGGAATCGA
AAAGAGCAAGAGAAAAGTGTGAAAAGAGTACACATGCTTACAGGTCATGC
ACACCGCTTACGGTGACTCACAGCCACTTGTAGACCTAGCCCGGCGCAGC
TGACATGTTTTCTGGCCTTTGTGGGAACATGCACTCATGCATACACACCC
ACACACATAAACATAACTAAAAATAAAATC

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACAAGACCCTGTCTTCACTATGATATTG
TTTACACTGTGCCATTGAGCCTCAGAAGAAATACTCTGAAAGGGAAATCT
GATAGGCCATGAATTGGAAGGAGAAAGGGGTCATCTTATGCCCATGTAGT
CTGCTACCCACCTCATAAATACTCATAAAAAGGCTCTTAACACCCAGCCA
GAGCCCACTGTACTGGCGCCACTGGGCCTTTGGTCTGCCTGCCTCAGTCT
TTCCCTGGTGTGCACTAGACAATTCTTCTTTGCTAAAGAAACTTCTCTGA
CTGTGTCTCTCAGCTGAATTCTTTTCTTCAAGAAGACAAAAGCCAAAGAG
GAAACCTTTACCCAATAGCAGAAAAGCTGGACGGCTGATGGACAGAGTAG
AGTACAGAAAACTGGTTGCCAAGTTATTGACGGAGTGGGAAGGAGGAAGG
ATGCCTGGGTAGATGCAAGGATGGTGCATGAGACTGAGCACTGGCCCTGG
GAAAGCCAGAGAGCACCCTTGGTCTCCTCTCAGGGGGAAGGAAGACAGCA
GTGCATGTTTATCACATGAACACGTGACTACTGCGTAGCTGTAGAACGCG
TGCTTCAGCGTGAGCGTGGTCTTAGGTCCAATCCTCAGCAACACGCCTCA
GCAGCGATGTCTACCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_e13.b1 MSMg01no132_e13.b1 CHROMAT_FILE:
MSMg01no132_e13.b1 PHD_FILE: MSMg01no132_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:45 2005
         (685 letters)



>mm_chr12_113320942_113322026
          Length = 1085

 Score = 1303 bits (674), Expect = 0.0
 Identities = 680/682 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagggtagtcacagctacacagagaaaccctgtctaaaagagacagagaaaga 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagggtagccagagctacacagagaaaccctgtctaaaagagacagagaaaga 263

                                                                       
Query: 64  gagactgatagagagagacagagagacagaaagagaactgctacattaccaatgtctaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagactgatagagagagacagagagacagaaagagaactgctacattaccaatgtctaca 323

                                                                       
Query: 124 gaaattaaatagcaaaatcactgtagaataagttaagaaataatgaggataaacctaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaattaaatagcaaaatcactgtagaataagttaagaaataatgaggataaacctaaca 383

                                                                       
Query: 184 ataataaaagaatgggatttttaaaaagggtccagaggaaggcatgagaaatggctcagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataataaaagaatgggatttttaaaaagggtccagaggaaggcatgagaaatggctcagc 443

                                                                       
Query: 244 ggttagaagtacttactgctccccagagcagccaggctccttagcagcacccatgctgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggttagaagtacttactgctccccagagcagccaggctccttagcagcacccatgctgag 503

                                                                       
Query: 304 tgactcacagctacctgtaactccagcttcaggggatctgaaaccttcctcaggtttcag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgactcacagctacctgtaactccagcttcaggggatctgaaaccttcctcaggtttcag 563

                                                                       
Query: 364 aacatacatctgtacatatgaatgggacatacgaacacacacacacacacgcacacgcac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacatacatctgtacatatgaatgggacatacgaacacacacacacacacgcacacgcac 623

                                                                       
Query: 424 gcatgcacaccttaaaaattaaaggtgcacacagagaaaggagagtaaataaaaagagaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcatgcacaccttaaaaattaaaggtgcacacagagaaaggagagtaaataaaaagagaa 683

                                                                       
Query: 484 taatgtaggaaagaggaatcgaaaagagcaagagaaaagtgtgaaaagagtacacatgct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taatgtaggaaagaggaatcgaaaagagcaagagaaaagtgtgaaaagagtacacatgct 743

                                                                       
Query: 544 tacaggtcatgcacaccgcttacggtgactcacagccacttgtagacctagcccggcgca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tacaggtcatgcacaccgcttacggtgactcacagccacttgtagacctagcccggcgca 803

                                                                       
Query: 604 gctgacatgttttctggcctttgtgggaacatgcactcatgcatacacacccacacacat 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gctgacatgttttctggcctttgtgggaacatgcactcatgcatacacacccacacacat 863

                                 
Query: 664 aaacataactaaaaataaaatc 685
           ||||||||||||||||||||||
Sbjct: 864 aaacataactaaaaataaaatc 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_e13.g1 MSMg01no132_e13.g1 CHROMAT_FILE:
MSMg01no132_e13.g1 PHD_FILE: MSMg01no132_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:45 2005
         (652 letters)



>mm_chr12_113433488_113434539
          Length = 1052

 Score = 1261 bits (652), Expect = 0.0
 Identities = 652/652 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacaagaccctgtcttcactatgatattgtttacactgtgccattgagcctcagaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tcacaagaccctgtcttcactatgatattgtttacactgtgccattgagcctcagaagaa 703

                                                                       
Query: 61  atactctgaaagggaaatctgataggccatgaattggaaggagaaaggggtcatcttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atactctgaaagggaaatctgataggccatgaattggaaggagaaaggggtcatcttatg 643

                                                                       
Query: 121 cccatgtagtctgctacccacctcataaatactcataaaaaggctcttaacacccagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cccatgtagtctgctacccacctcataaatactcataaaaaggctcttaacacccagcca 583

                                                                       
Query: 181 gagcccactgtactggcgccactgggcctttggtctgcctgcctcagtctttccctggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gagcccactgtactggcgccactgggcctttggtctgcctgcctcagtctttccctggtg 523

                                                                       
Query: 241 tgcactagacaattcttctttgctaaagaaacttctctgactgtgtctctcagctgaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgcactagacaattcttctttgctaaagaaacttctctgactgtgtctctcagctgaatt 463

                                                                       
Query: 301 cttttcttcaagaagacaaaagccaaagaggaaacctttacccaatagcagaaaagctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cttttcttcaagaagacaaaagccaaagaggaaacctttacccaatagcagaaaagctgg 403

                                                                       
Query: 361 acggctgatggacagagtagagtacagaaaactggttgccaagttattgacggagtggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acggctgatggacagagtagagtacagaaaactggttgccaagttattgacggagtggga 343

                                                                       
Query: 421 aggaggaaggatgcctgggtagatgcaaggatggtgcatgagactgagcactggccctgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aggaggaaggatgcctgggtagatgcaaggatggtgcatgagactgagcactggccctgg 283

                                                                       
Query: 481 gaaagccagagagcacccttggtctcctctcagggggaaggaagacagcagtgcatgttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaaagccagagagcacccttggtctcctctcagggggaaggaagacagcagtgcatgttt 223

                                                                       
Query: 541 atcacatgaacacgtgactactgcgtagctgtagaacgcgtgcttcagcgtgagcgtggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atcacatgaacacgtgactactgcgtagctgtagaacgcgtgcttcagcgtgagcgtggt 163

                                                               
Query: 601 cttaggtccaatcctcagcaacacgcctcagcagcgatgtctaccccttccc 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cttaggtccaatcctcagcaacacgcctcagcagcgatgtctaccccttccc 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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