BAC Information

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BAC

Clone NameMSMg01-132I09
Chromosome12 (Build37)
Map Location 38,471,583 - 38,471,932
singlet/doubletsinglet
Overlap genenone
Upstream geneMeox2, A530016O06Rik
Downstream geneLOC100043139, Dgkb, LOC668824, LOC100043142
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132I09.T7 (MSMg01no132_i09.b1)MSMg01-132I09.TJ (MSMg01no132_i09.g1)
ACCAG339742AG339743
length710710
length of high quality
(start - end)
---342 (76 - 417)
definitionCHROMAT_FILE: MSMg01no132_i09.b1 PHD_FILE: MSMg01no132_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:03 2005CHROMAT_FILE: MSMg01no132_i09.g1 PHD_FILE: MSMg01no132_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AGTTTCATATGTTGCCTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXX
CCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGTAGTGTTGTCCCAGGTG
TTCTCAACAGGGACAAAAGAAGCTCATGACCATGAAACAGAACCCTTTAT
GTCAGAAACAGAATCTGGCTCTTCCCCTGATGAAACCATGGTACAAGAAC
AAAATGAAACGTGGAGCAGGTATTTGCACACATGAACAACATGGATTAAA
AGAGCAGATGATGAACGCTTTATACAGAGACGATATTTGAGAAATTGCTC
ATTAAGAAAGCCTGGTCACTAAGCTATGAATGACTTGTTAGAGATCAGGA
GAGAAAGTGAAGAAAATAGTACCAAAAAGACTGAGTGAACGCATGAACTA
CAGTTCCTGAAACAGTTTCACACACATCCCAAACGGTGCTGAGTTATCCT
TGTAAGAGACTGTCATTACTCTCTGCCTTCCTCCTGATCTCTGTCTCTCA
GTTAAGTTTCTATGTCAGGGTTGATTCTTCTGTTTGGGAGGATGGATGGT
TTCATGCAGACAGCATCTAGAAGATGAAGGCTTGATCAGAACCTGGATGG
TCCTGACAGGTGATGTACCTGGGCATTACTGTTTTCTAGGTCTGGATTCT
GTGCTCACTACTGCAACCCATAGTCAAGGTCTGCTGTCTTACTAAAACAT
GTAGAATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_i09.g1 MSMg01no132_i09.g1 CHROMAT_FILE:
MSMg01no132_i09.g1 PHD_FILE: MSMg01no132_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:03 2005
         (342 letters)



>mm_chr12_38471391_38472132
          Length = 742

 Score =  588 bits (304), Expect = e-172
 Identities = 335/350 (95%), Gaps = 8/350 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagtagtgttgtcccaggtgttctcaacagggacaaaagaagctcatgaccatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 caggccagtagtgttgtcccaggtgttctcaacagggacaaaagaagctcatgaccatga 252

                                                                       
Query: 61  aacagaaccctttatgtcagaaacagaatctggctcttcccctgatgaaaccatggtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aacagaaccctttatgtcagaaacagaatctggctcttcccctgatgaaaccatggtaca 312

                                                                       
Query: 121 agaacaaaatgaaacgtggagcaggtatt--------tgcacacatgaacaacatggatt 172
           ||||||||||||||| |||||||||||||        |||||||||||||||||||||||
Sbjct: 313 agaacaaaatgaaacatggagcaggtatttgcacatctgcacacatgaacaacatggatt 372

                                                                       
Query: 173 aaaagagcagatgatgaacgctttatacagagacgatatttgagaaattgctcattaaga 232
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 373 acaagagcagatgatgaacgctttatacagagacaatatttgagaaattgctcattaaga 432

                                                                       
Query: 233 aagcctggtcactaagctatgaatgacttgttagagatcaggagagaaagtgaagaaaat 292
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aagcctggtaactaagctgtgaatgacttgttagagatcaggagagaaagtgaagaaaat 492

                                                             
Query: 293 agtaccaaaaagactgagtgaacgcatgaactacagttcctgaaacagtt 342
           |||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 493 agtagcaaaaagactgagtgaacgcatgaactgcagttcctgaaacagtt 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)