BAC Information

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BAC

Clone NameMSMg01-133J23
Chromosome12 (Build37)
Map Location 42,974,245 - 42,974,435
singlet/doubletsinglet
Overlap geneImmp2l
Upstream geneLrrn3
Downstream geneEG638533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133J23.T7 (MSMg01no133_j23.b1)MSMg01-133J23.TJ (MSMg01no133_j23.g1)
ACCAG340550AG340551
length724728
length of high quality
(start - end)
164 (62 - 225)195 (123 - 317)
definitionCHROMAT_FILE: MSMg01no133_j23.b1 PHD_FILE: MSMg01no133_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:28 2005CHROMAT_FILE: MSMg01no133_j23.g1 PHD_FILE: MSMg01no133_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCTATACGACTCCTANATCGTGACGGGCGCGGAATTCAAATA
GTTTACAAGAAATGCTACCAAAAGCAATCTACAGATTCAATGCAATCCAC
TGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACT
TTATATGCCCCAGTACAGGGGAACACCAGGGCCAAGAATTGGGAGTGGGT
GGGTAGGAGAGTGGGTGGGGGGTATGAACCCATCTCTCCTCTCCTTCCTT
CCTCCTCACCTCATTCCTTTTTTCTCTTTTTTACACTTTTCTCCCCCCCC
CCTTCCCCCATTTTTTTTTTTCATCTCCCCTCCCTTTTCTCCTTTTTTTC
CTCTCCTTTTCCCCCACCCTCCCTCCTCCCATCCTTTTTTCTTTTTCTCC
TTTCCCTCCCCTTTCTCTACTCTTCCGTTTCTCCCCCTTTTTTCCTCTCT
CCTCCTCTACACCTAACTTTCCCTTCCCCATTCCACCCCACGTTTCCCTT
TTCTTCCCTTTCTCCCCTCCTTCTCCCTCTCTTTTCTCTCTTTCTCTCCT
CCCTTCTCCTTCCCTCTTACACTCTTTCCTCTTTTTATCACCTTCCATAT
CTTTCCTCTCCCCTCTTCTTTTTTTCCTTATATTTTTTTCACCATATTGT
TATACCGTCCCTCTTCCCCCCCCTTTATTTCTTTCCTCTTTCCCCCCCCT
TTTTCCCTAATTTCTTTCCCCCTC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTGGTCTATCAAGAAGAAAGAGAAAGAGAGAA
AGAAAGAGAGATTTTTAGCGAGACACAGAGAGAGAAAGGATCAAACAAAG
AAAGATACAAAGAAACAAAGTGAGAGAGAGGGAGAGTGAGTAAGGAAGAC
AAAGTTGGCATGGCAGGTAGATCTGGGCGGCACTAAGGGGGTGAGTGGTG
TTTATATATGATAAAAGTACATTATATGTATATATAACATCTTAAAATTT
AGTAGGATGTTAAGAAAGACTGTAAAGGGGAAAATATGAAGAATATTGGG
CAAAGTTTCACTCGGATCCCCCCCCCCCCCCAAGTCTCAATAATAAAGAT
TAGGAGAAAATGATGGTGTCAACACACAACATGATGAAAATGGTGGGGAA
TATTTACTCTCTATTTAATACAAGGATATTTTATGTTACCACATTGATTC
ATCATCCTGAATTATGCATTTTCGTCAAGGAATATACCTGAAAGAACTTA
CTTAACAAGGAATAAAATTTAAAATATGCTTATTCTCCAGAAATATAACT
GACGTACATGCCTGCAAATACAAAATGTACTTTAACTGTTACAAAATAAA
GTAACATACTTAACTTATCTTACGAATTTTCAAATCTGATCTAACCCCAT
GTTTTTCCATACCTTTAATACTTTAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_j23.g1 MSMg01no133_j23.g1 CHROMAT_FILE:
MSMg01no133_j23.g1 PHD_FILE: MSMg01no133_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:28 2005
         (195 letters)



>mm_chr12_42974041_42974635
          Length = 595

 Score =  369 bits (191), Expect = e-107
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   agagagagaaaggatcaaacaaagaaagatacaaagaaacaaagtgagagagagggagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agagagagaaaggatcaaacaaagaaagatacaaagaaacaaagtgagagagagggagag 264

                                                                       
Query: 65  tgagtaaggaagacaaagttggcatggcaggtagatctgggcggcactaagggggtgagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagtaaggaagacaaagttggcatggcaggtagatctgggcggcactaagggggtgagt 324

                                                                       
Query: 125 ggtgtttatatatgataaaagtacattatatgtatatataacatcttaaaatttagtagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtgtttatatatgataaaagtacattatatgtatatataacatcttaaaatttagtagg 384

                      
Query: 185 atgttaagaaa 195
           |||||||||||
Sbjct: 385 atgttaagaaa 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)