Query= MSMg01no134_e12.b1 MSMg01no134_e12.b1 CHROMAT_FILE:
MSMg01no134_e12.b1 PHD_FILE: MSMg01no134_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:32 2005
(772 letters)
>mm_chr12_107565031_107566203
Length = 1173
Score = 1317 bits (681), Expect = 0.0
Identities = 760/810 (93%), Gaps = 38/810 (4%)
Strand = Plus / Plus
Query: 1 aactcaggnacaaacagctgagcctcctgccgtcacaagggggtc-ggacaaatgaggag 59
|||||||| |||||||||||| ||||||| | |||||||||| | ||||||||||||||
Sbjct: 164 aactcaggcacaaacagctgaacctcctgtgggcacaaggggggccggacaaatgaggag 223
Query: 60 cggatcccctgaagggcaaggacccccatgcagagaggcatcgccagcagagaccccctt 119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cggatcccctgaagggcgaggacccccatgcagagaggcatcgccagcagagaccccctt 283
Query: 120 ggtgtgtgctttcctttaatcagtgaatatatatatatatatata--------------- 164
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggtgtgtgctttcctttaatcagtgaatatatatatatatatatatatatatatatatat 343
Query: 165 ---------------------atatacctgtaattgctgctgaaaatgtagctgttttga 203
|||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atatatatatatatatatataatatacctgtaattgctgctgaaaatgtagctgttttga 403
Query: 204 aaggtttagtggctctgtggttgggtaagtaccttaatgtgctcacagacctgagatggg 263
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 404 aaggtttagtggctctgtggttgggtaagtaccttaatgtgctcatagacctgagatggg 463
Query: 264 gagtcacaggtattatgctattattccataaagtaatgagaatttccagtttctcctgct 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gagtcacaggtattatgctattattccataaagtaatgagaatttccagtttctcctgct 523
Query: 324 agggagacatggctgatggagaccacgtgcttcagaagtcttgtattgaattttgactgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agggagacatggctgatggagaccacgtgcttcagaagtcttgtattgaattttgactgg 583
Query: 384 aataacttagtccaaattaggtaagagtctcacttctaaaagagtttttt-ctttctttc 442
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 584 aataacttagtccaaattaggtaagagtctcacttctaaaagagtttttttctttctttc 643
Query: 443 tttccaaaggtagattagttttagtatctgtgcaggaactgatactcaactgacaatcag 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tttccaaaggtagattagttttagtatctgtgcaggaactgatactcaactgacaatcag 703
Query: 503 cctctgtggaagtttgataagaattagacagttgtgtgcttaaaactgacatgagcctaa 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cctctgtggaagtttgataagaattagacagttgtgtgcttaaaactgacatgagcctaa 763
Query: 563 ggaagacgagacaaaaaagagtaacgttaaccccccatagtaagctactgcactctgcca 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggaagacgagacaaaaaagagtaacgttaaccccccatagtaagctactgcactctgcca 823
Query: 623 agagtcagacgaagcaggcctgctgaagttaggagcgggtattttatacacagagagtgt 682
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 agagtcagacgaaacaggcctgctgaagttaggagcgggtattttatacacagagagtgt 883
Query: 683 caggaatagcctgatagcttcagttagcccagctagaagccaagggtagctccgagaaag 742
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 884 caggaatagcctgatagcttcagttagcccagctagaaaccaagggtaactccgagaaag 943
Query: 743 gctgcaaactgcccctcccatcacccagtt 772
|||||||||||||||||||||| |||||||
Sbjct: 944 gctgcaaactgcccctcccatctcccagtt 973
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1173
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1163
Effective search space: 886206
Effective search space used: 886206
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_e12.g1 MSMg01no134_e12.g1 CHROMAT_FILE:
MSMg01no134_e12.g1 PHD_FILE: MSMg01no134_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:32 2005
(400 letters)
>mm_chr12_107713990_107714782
Length = 793
Score = 663 bits (343), Expect = 0.0
Identities = 383/400 (95%), Gaps = 7/400 (1%)
Strand = Plus / Minus
Query: 1 atggccttggnacgacctcgaaggggaaaaaaacatctatttgtgaggcatacgattatc 60
|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 729 atggccttggtatgacctcgaaggggaaaaaaaaatctatttgtgaggcatacgattatc 670
Query: 61 tagggttttagtaaatgcaattacagcgacaatcttaatccaaacagttgaacaaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tagggttttagtaaatgcaattacagcgacaatcttaatccaaacagttgaacaaaaata 610
Query: 121 aattaaaattaaataagataaacctcaccctcaatcattagactatgagttgtaccggac 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 609 aattaaaattaaataagataaacctcaccctcaatcattacactatgagttgtaccggac 550
Query: 181 cgcagggtggctctttgacctttgtcttgcatctatattagaagaggcaccacctggaca 240
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 549 cgcagggtggctatttgacctttgtcttgcatctatattagaagaggcactacctggaca 490
Query: 241 gaaatcaaggtgcacttgggcacacccaccagcctgacctgttctacacccaggtctgaa 300
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 489 gaaatcaaggtgcacttgggcacacccaccagcctgacctggccaacacccaggtctgaa 430
Query: 301 acaaatggtttctgcttttcattggggccggggtgggggggggtcctgtccactggacct 360
||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 429 acaaacggtttctgcttttcattg-----ggggt--gggggggtcctgtccactggacct 377
Query: 361 ccaacagtgtcttgctctgagaggcacaacactggtcctg 400
||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccaacagtgtcttgctctgagaggcacaacactggtcctg 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 793
Length adjustment: 9
Effective length of query: 391
Effective length of database: 784
Effective search space: 306544
Effective search space used: 306544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
