BAC Information

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BAC

Clone NameMSMg01-134E16
Chromosome12 (Build37)
Map Location 27,829,178 - 27,983,177
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134E16.T7 (MSMg01no134_e16.b1)MSMg01-134E16.TJ (MSMg01no134_e16.g1)
ACCAG341042AG341043
length1,2351,212
length of high quality
(start - end)		776 (88 - 863)641 (136 - 776)
definitionCHROMAT_FILE: MSMg01no134_e16.b1 PHD_FILE: MSMg01no134_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:33 2005CHROMAT_FILE: MSMg01no134_e16.g1 PHD_FILE: MSMg01no134_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,982,405 - 27,983,177)(27,829,178 - 27,829,816)
sequence
CCCCTTCTTTTNTAAACAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATTCTTACCATCTCTCCTTTAAGTGATGTTCTGATCTT
CTTTGAGCATTGACCTCACTTAGAGGCTCTCTTCATCTACCCTCCATCAG
CTGTTCTATAATAAGGTCTCAGCTACATCAGCCTCACAGCCTCTTCAGAG
CTCAGCTTCAACACATAGGTGGTCTCCTGCCTTGCAGTGGGTACCTTCAG
GGCTCAATGAAGCCACAGGCATGGGTGTTGCAGCTAGATAATACATGACT
TCCACATCCTTGAACCAAGGCTTGGGCATGCCACATTACCCTACCAATGT
GACAGCTAAGAGAAAGATACCCCAAATCAAAATCTCCAAATCCATCACTG
TGAGGACAGCTGGCTCAGTGATATCATCTACAGACCCTTTTCTTTCTTCA
CATCTTGCAAATAGCAGATAACCAAGGTAAACTGGGACAAGGACAGATAT
CATGGGCTGCTGGAGTGCCCAGTAAAGGTCTGTGGCCCCTGATCTGTCTT
GTGCACCTGGGCTTCACACGTTTACTGAGCAGGCTTTGATTGTTCCAAAT
CTGGCCTTTTCCGTTCAGGACACTGCTGTACGTAACAACAGAAATAGATT
CAAATTTAGATGCTGTCACAGCATTCGGAAATAGGATGTGATGGACGGGA
GACTCCTTTGTTTCTGTCATTCTATGTGAGCATCCTGTTTGTGTGTGAAA
TTTAAAGTAACGAAATTGAGAGGTGCAGGGATTTTTCTTTGGTAAATGTA
GATAGCCCCCCTTTCTCTTTCTTTCCTTCCTTGGTTTTTCTTTATCCTTT
TCTTTCTTTGGTTTGTTTGTTTTGTTCTGTTTTTGTATCTCTTGGAGCTA
GCTATCTTTAAGCTATCTTTAAACTCATTGTTTTGCTGAAAAAGAACTCG
AACTTCTGATCTTCCTGGGTCCACCTCCCAAATTTTTTGTGATGAGATTA
AGAACTTGGCCCCCCATGCCCAGTTTTTTTTGTGGCCAAAAAGAATTCTC
TATAGTCTCTTGGTGGGCAATTAAACCCCCTCCCACCGGTGGTTATAAAA
AGGGGGCCTTTTTTTTCTCTTAAAAATTTCTTCGGAAGAATATAATCCTT
AAGCTGAAATTTACCCCTTCTCTATTAAAACCCATGTGCCTTTTTTATTG
ATGTGTGTATTTTAAGGGGGGGGAACACTCTCTTT

CTCTTCTTTTTTTAAGATGGTACCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAACCCTGTGGATTGGNGNCT
ATTGAGGTCTCCCTCCTTAAAATTGTAGATTCTCCCCTAGGGCCCTCATC
TCAACCTTGGGCTGGTGTCCATGAATATCTTATTGCTACCTGCTCAGAGA
TGGCATGCTAACCATGATGGGATTTATCCAGATCAATCTCGGTTCCTAGC
TCAGCAAGCTGCTCAGCTCTAAAGCCTGTGCCACGTGGTGCCTACAATCT
AAGACAGAAGTGTTTAAGGGGAGCCTTAAAAGTGAAGTGTGTCGGGCTCT
GAGTACATTTCTCATTCCAATAGCTCACAGAAGTTCGGGCTTCCATCCTT
GTTTTTTGTTCTAAGTTTCATGTCTTCTATGTGGACTTCTATGGAACTAT
GTGGCCCTGTGCTCAGTAAGGGTGCTGGGCATTCTCTATAATGTCTGTTC
TCTTACCTTGCATCCTGCTACGCTGAAAGCACTCTGAGGGTGAGAGAGAG
AATGGGGTATGTACCTGCTCAGATTGTAGCCTTTACCTCATCCCATTTCT
ATTTCATAATAGTAAAAATAAAACCCTGGCTGTTAAAGCAGAGACAAACC
TCAATCAAGTCACACCATCATCCCCTTTCCACACACCAACATACTTAGAG
TGGATGCCAGTGAGGGATTCAACAATGGGACCAGGCATTTGGCCTTGGAC
TATGACATTCTGCATCCTAGCTTCTCTGCTTGGATGTTGCATGACAGACA
GTGGGTCCTTTGCTCATTTTTCAATACTTTCATCTCCTACACCACGTTGA
AGGTGAACAGAGAGACAGCCACCCTTGGTTGCACAGGTTCTGTAGTACAG
TGTTTGCCCATAAATGTTTGTCATTCATAGTGGCCAGCACAGCCATTTGT
TTGGCTTCCTCCCTCCGAGTACAAAAGGCTCGCTACTTGTGTTATAACTT
TTCCCTCTTAATAAACCTCCTTTTTTGTAAATGAGTTGTTTCTGTGAATC
TATTTTCTAAAATTTCCTTTTTGTTGAGTTACTTCTCCCTCTTCTTTTCC
CATTTGTGGATTTTGGATTTTTATCTTTTCTCTCCTATCGGACATATGTA
TTTTTCTTTTNCTTTTATGCTGTTATTTTCATTTCTTCTATGTTGTTTTT
TTTCTTCTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_e16.b1 MSMg01no134_e16.b1 CHROMAT_FILE:
MSMg01no134_e16.b1 PHD_FILE: MSMg01no134_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:33 2005
         (776 letters)



>mm_chr12_27982354_27983529
          Length = 1176

 Score = 1479 bits (765), Expect = 0.0
 Identities = 771/773 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttctgatcttctttgagcattgacctcacttagaggctctcttcatctaccctccat 60
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 824 atgttctgatcttctttgagcattgaccttatttagaggctctcttcatctaccctccat 765

                                                                       
Query: 61  cagctgttctataataaggtctcagctacatcagcctcacagcctcttcagagctcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cagctgttctataataaggtctcagctacatcagcctcacagcctcttcagagctcagct 705

                                                                       
Query: 121 tcaacacataggtggtctcctgccttgcagtgggtaccttcagggctcaatgaagccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tcaacacataggtggtctcctgccttgcagtgggtaccttcagggctcaatgaagccaca 645

                                                                       
Query: 181 ggcatgggtgttgcagctagataatacatgacttccacatccttgaaccaaggcttgggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ggcatgggtgttgcagctagataatacatgacttccacatccttgaaccaaggcttgggc 585

                                                                       
Query: 241 atgccacattaccctaccaatgtgacagctaagagaaagataccccaaatcaaaatctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atgccacattaccctaccaatgtgacagctaagagaaagataccccaaatcaaaatctcc 525

                                                                       
Query: 301 aaatccatcactgtgaggacagctggctcagtgatatcatctacagacccttttctttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaatccatcactgtgaggacagctggctcagtgatatcatctacagacccttttctttct 465

                                                                       
Query: 361 tcacatcttgcaaatagcagataaccaaggtaaactgggacaaggacagatatcatgggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tcacatcttgcaaatagcagataaccaaggtaaactgggacaaggacagatatcatgggc 405

                                                                       
Query: 421 tgctggagtgcccagtaaaggtctgtggcccctgatctgtcttgtgcacctgggcttcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgctggagtgcccagtaaaggtctgtggcccctgatctgtcttgtgcacctgggcttcac 345

                                                                       
Query: 481 acgtttactgagcaggctttgattgttccaaatctggccttttccgttcaggacactgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acgtttactgagcaggctttgattgttccaaatctggccttttccgttcaggacactgct 285

                                                                       
Query: 541 gtacgtaacaacagaaatagattcaaatttagatgctgtcacagcattcggaaataggat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtacgtaacaacagaaatagattcaaatttagatgctgtcacagcattcggaaataggat 225

                                                                       
Query: 601 gtgatggacgggagactcctttgtttctgtcattctatgtgagcatcctgtttgtgtgtg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gtgatggacgggagactcctttgtttctgtcattctatgtgagcatcctgtttgtgtgtg 165

                                                                       
Query: 661 aaatttaaagtaacgaaattgagaggtgcagggatttttctttggtaaatgtagatagcc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aaatttaaagtaacgaaattgagaggtgcagggatttttctttggtaaatgtagatagcc 105

                                                                
Query: 721 cccctttctctttctttccttccttggtttttctttatccttttctttctttg 773
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cccctttctctttctttccttccttggtttttctttatccttttctttctttg 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 776
Length of database: 1176
Length adjustment: 10
Effective length of query: 766
Effective length of database: 1166
Effective search space:   893156
Effective search space used:   893156
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no134_e16.g1 MSMg01no134_e16.g1 CHROMAT_FILE:
MSMg01no134_e16.g1 PHD_FILE: MSMg01no134_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:33 2005
         (641 letters)



>mm_chr12_27828978_27830018
          Length = 1041

 Score = 1220 bits (631), Expect = 0.0
 Identities = 637/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctagggccctcatctcaaccttgggctggtgtccatgaatatcttattgctacctgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctagggccctcatctcaaccttgggctggtgtccatgaatatcttattgctacctgctc 260

                                                                       
Query: 61  agagatggcatgctaaccatgatgggatttatccagatcaatctcggttcctagctcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagatggcatgctaaccatgatgggatttatccagatcaatctcggttcctagctcagc 320

                                                                       
Query: 121 aagctgctcagctctaaagcctgtgccacgtggtgcctacaatctaagacagaagtgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctgctcagctctaaagcctgtgccacgtggtgcctacaatctaagacagaagtgttt 380

                                                                       
Query: 181 aaggggagccttaaaagtgaagtgtgtcgggctctgagtacatttctcattccaatagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggggagccttaaaagtgaagtgtgtcgggctctgagtacatttctcattccaatagct 440

                                                                       
Query: 241 cacagaagttcgggcttccatccttgttttttgttctaagtttcatgtcttctatgtgga 300
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 441 cacagaagttcgggcttccatccttgtttgctgttctaagtttcatgtcttctatgtgga 500

                                                                       
Query: 301 cttctatggaactatgtggccctgtgctcagtaagggtgctgggcattctctataatgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttctatggaactatgtggccctgtgctcagtaagggtgctgggcattctctataatgtc 560

                                                                       
Query: 361 tgttctcttaccttgcatcctgctacgctgaaagcactctgagggtgagagagagaatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttctcttaccttgcatcctgctacgctgaaagcactctgagggtgagagagagaatgg 620

                                                                       
Query: 421 ggtatgtacctgctcagattgtagcctttacctcatcccatttctatttcataatagtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtatgtacctgctcagattgtagcctttacctcatcccatttctatttcataatagtaa 680

                                                                       
Query: 481 aaataaaaccctggctgttaaagcagagacaaacctcaatcaagtcacaccatcatcccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaataaaaccctggctgttaaagcagagacaaacctcaatcaagtcacaccatcatcccc 740

                                                                       
Query: 541 tttccacacaccaacatacttagagtggatgccagtgagggattcaacaatgggaccagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttccacacaccaacatacttagagtggatgccagtgagggattcaacaatgggaccagg 800

                                                  
Query: 601 catttggccttggactatgacattctgcatcctagcttc 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catttggccttggactatgacattctgcatcctagcttc 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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