Query= MSMg01no134_h04.b1 MSMg01no134_h04.b1 CHROMAT_FILE:
MSMg01no134_h04.b1 PHD_FILE: MSMg01no134_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:51 2005
(348 letters)
>mm_chr12_75416865_75417612
Length = 748
Score = 435 bits (225), Expect = e-126
Identities = 291/347 (83%), Gaps = 55/347 (15%)
Strand = Plus / Minus
Query: 1 actcacatgtccacgcatgcacacacaagttcatgtgcacttgtatactcatgtgtccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 actcacatgtccacgcatgcacacacaagttcatgtgcacttgtatactcatgtgtccac 264
Query: 61 agacattcatgcacaccaaactgtatacacaggcatattcacatgcatacatactgactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agacattcatgcacaccaaactgtatacacaggcatattcacatgcatacatactgactg 204
Query: 121 tgcatatatatatatatatatatatatacatatatatatatatatatatactgactgtgc 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 203 tgcatatatatatatatatatatatata----tatatatatatatatatactgactgtgc 148
Query: 181 atatatatatatacatacatatatatatatatatatactgactgtgcatatatatatatg 240
|||||||| | ||||||
Sbjct: 147 atatatat-t--------------------------------------------tatatg 133
Query: 241 cacagtcatacatatgtgcatatatatatgtatgtatatatatatatatacatacatacc 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 132 cacagtcatacatatgtgcatatatatatgtatgtatatatata------catacataca 79
Query: 301 cgcacacacatacacaagcatgtgtacatatatataatatatgcctc 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cgcacacacatacacaagcatgtgtacatatatataatatatgcctc 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 304
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_h04.g1 MSMg01no134_h04.g1 CHROMAT_FILE:
MSMg01no134_h04.g1 PHD_FILE: MSMg01no134_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:52 2005
(661 letters)
>mm_chr12_75284995_75286055
Length = 1061
Score = 1236 bits (639), Expect = 0.0
Identities = 654/659 (99%)
Strand = Plus / Plus
Query: 3 gaacccaggtcctctggaaagcaggcaatgttatcaactgcggagccatactggttttga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaacccaggtcctctggaaagcaggcaatgttatcaactgcggagccatactggttttga 262
Query: 63 agatatgaaagagtcataaagaatagaggaggcttggtaccatgtgaagtccctgcagag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agatatgaaagagtcataaagaatagaggaggcttggtaccatgtgaagtccctgcagag 322
Query: 123 agactctgagaggccattggtgaagatgcagcctcagttcaaagagaaaccccaggattt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agactctgagaggccattggtgaagatgcagcctcagttcaaagagaaaccccaggattt 382
Query: 183 tggagatgccaggatcatgagatgaccaccaagtatagcagcaggtacggagtggatcta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggagatgccaggatcatgagatgaccaccaagtatagcagcaggtacggagtggatcta 442
Query: 243 acctaagcctgtatgataagctgtatgtgctatttttggtggcggtgaagaggggagcta 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 443 acctaagcctgtatgataagctgtatgtgctatgaatggtggcggtgaagaggggagcta 502
Query: 303 cctaagctgtctaaagctcaaagaccaggagttcccgttcttccgatgtagcccattaca 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 503 cctaagctgtctaaagctcaaagaccaggagttcccgtttttccgatgtagcccattaca 562
Query: 363 gtcacgcatcaccaagttaaaaaactacccacaatttgcctaagacgggttatattggca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtcacgcatcaccaagttaaaaaactacccacaatttgcctaagacgggttatattggca 622
Query: 423 agaaaggggcagaaagtgtaatatctagagaggccacctcttttaccccctcaattccgg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaaaggggcagaaagtgtaatatctagagaggccacctcttttaccccctcaattccgg 682
Query: 483 gtacttggtttctccagtcagtgtgtaagtcccgaatgatcgaggtatcgagcgcgctgg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtacttggtttctccagtcagtgtgtaagtcccgaatgatcgaggtatcgagcgcgctgg 742
Query: 543 gtccgtctctggtgccatttggtttgcgcttctggattctccacggaattagctgaaatt 602
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtctgtctctggtgccatttggtttgcgcttctggattctccacggaattagctgaaatt 802
Query: 603 catcatgagtatccagggcatttagtttttgtaagagtttgaagttcataggcgcttgg 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 catcatgagtatccagggcatttagtttttgtaagagtttgaagttcataggcgcttgg 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
