BAC Information

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BAC

Clone NameMSMg01-134J21
Chromosome12 (Build37)
Map Location 9,390,595 - 9,390,934
singlet/doubletsinglet
Overlap genenone
Upstream geneBC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneLOC633030, LOC100042238, Osr1, LOC382567, Nt5c1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134J21.T7 (MSMg01no134_j21.b1)MSMg01-134J21.TJ (MSMg01no134_j21.g1)
ACCAG341288AG341289
length1,1601,197
length of high quality
(start - end)
329 (468 - 796)340 (470 - 809)
definitionCHROMAT_FILE: MSMg01no134_j21.b1 PHD_FILE: MSMg01no134_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:11 2005CHROMAT_FILE: MSMg01no134_j21.g1 PHD_FILE: MSMg01no134_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATTTTANNNNGGTCAATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGGTTAGAATTTTTGAGGCTTCCTTATGGAAACTATCA
TATCATCTACAGATACTGATACTTTGACTTCTTCCTTTCTAATTTGTATC
CCTTTGAGACCCTTTTGTTGTGTGCTTGCTCTCGCTAGCACTTTGAGCGC
TATATTGAATAGGTAGGGTGAGAATGGGCAGCCTTGTCTTATCACTTATT
TTAGTGGGAGAGTTTCAAATTTTTTCTATTAAATTGTATGTCGGCTGTTG
ATTTGCGGTATATTACTTTTATTTTGTTTAGGTATGTTCCATAAATTCCT
GATTCTCCAAGACTTTTAACATGAAGGGATGTTGGATTTTCAGCATCTAA
TGATATGATCATGTGATTTTTTTTCTTTGAGTTTGTTTATATATTGTAAC
TATGTTTATGCACCCCCATATATTGAATGATCCCTGCATCCATGGAATGA
AGCCTACTTGATCATGGTGAATGATGGTTTTGATATGTTTTTGGATTCAG
TTTGCAAGAATTTTTTGAGTACTTTTGCATTGATATTCATAACCTAAACT
GGCCTGAAATTCTCTTTCTTTGTTGGGTCTTTTTGTAGTTTAGGTATCAG
AGTAACTGTGGCTTCATAGTATGAATTATGTAACATTCCTTCTGTTTCTA
TTTTGTGGAATAGCTTGAGGAATATTGGTATTAGGTCTTTTTTGAAGGTT
TGGTAGAATTCAGTACTAAAACCATCTGGCCCTGGACATTTTTGGATGGG
AAGTTTTTAATGACTGCTTCTATTTCCTTAGGTGTTATAGGACTGTTTAA
ACAGTTTACCTGATCTTTATTTAACTTTGGTAAGTGGTCTAGAAAATCCC
CATTTCCCCTAAATTTCCAGTTTATTTGAAGGGTAGCTTTTTTTCTAAAA
AATGAATTATTTTTTTTTCCTATTTTTCGTTGTTTTTTCTCCCCCTCCAT
TTCTTATTTTTTCCAATTCTTATCCTCTCCCTCTTGGTTTTTTTTATCTT
ACTCTAGAATTTTTTTCTTTCTTCCTATTTTTTCTACTAACCCACATTTG
ATCTTTTGTATTCTTTTCTTTATTAACTTCTTCCCCTTCTTTTTTTTTTC
TTTTTTTTTT
NCCCATTATTNNNNNATTCAAGGNAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATACTCTCACCTACCCTT
CTGCAGTATGACCTCCTCCCTTTAATACGGAGAGGTAGAGCTTATTTTCT
TCTTGAATCTGGACTAATGCCACTGACTAACATACAACCCTCCGATGTGT
CAGCAGCACTGCATGACCTCAAAGTGTAAGTAAGAAGGCTTCACATTCTG
TCTTCTGCTATCTGGGTGTTTCCACTGGAATAAATCTTGTAAGAATTCTA
CAGTCATGATCTGAAAAGCCCATGTCATCCAAGAAGACCATAGGTGCTTC
AGTCTTAGATGAAATCAAATTTGACCACACACAACCCCAAGTGCGAGGCT
TTTGAGTTAAAGAGACTCCAGATGGTCCCACCATCCAGCATGCCAGTCAG
TTCTGGTCTTTACAGCCTTCTTTGCTGAGCCTCAGATGCCATGAGAAAAA
AAGACACCATCTGCATGGAGGTTGGCTCGCATGAACATAATAAATAAGGA
GTTTTGGTTTATGTCACTCAACTTGGACTTTTTTTTAAATGTAGCAATAT
ACTGACCAAGGATCTTGAACAACCTATGATGCTACCATGCTTTAGTTCTT
TCTGTTAAATGGAGTCTCATTCAAACCCTAAAGTGTTGACATGAAAATTA
AATGAGCACATAGAGGTGTGGCAATTCAAACAGGGCATTAGACTTAGTCA
ACTGGGAGAGTCAAAATAGAAGTAACAGAAACTCGTGGCTCTGAAGGAAG
CCCTCATGGCGTAGATGACTACTGCTGTTCCAAATTCTCTTTGCAGAGTC
CATATAGGAAGGTAGTAGAAGAAAAAGGTGAGATTTCTGCCTAGGTGGTT
ATACTAAACCTGCTGAAATAATTGGTTTCCCCCTTCTTTCCCCAAAAAAA
ATTTCAAAAAAATTGCTCCTTGCTCGGTTAAAACTGTTAAAAAAAATTTT
TATATTTTTCCCAAGTTGGGGCAATTATTTTTCTTATTTCTTATAAAGGA
TAAAAAAGTGTTCTCTTACAAAAAATTTTTTATTTTTTCTTCCAGCTTTC
ATTTTTTTGGATTTCTTATTTTTTATCTTTATTATTATCATAATATATCA
TTTCTTGCCTATCCCATTTTTGTTTATACATTTAGCTCTCCTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_j21.g1 MSMg01no134_j21.g1 CHROMAT_FILE:
MSMg01no134_j21.g1 PHD_FILE: MSMg01no134_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:11 2005
         (340 letters)



>mm_chr12_9390395_9391134
          Length = 740

 Score =  627 bits (324), Expect = 0.0
 Identities = 336/340 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgctgagcctcagatgccatgagaaaaaaagacaccatctgcatggaggttggctcg 60
           ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| ||
Sbjct: 201 ctttgctgagcctcagatgccatgaggcagaaagacaccatctgcatggaggttggcccg 260

                                                                       
Query: 61  catgaacataataaataaggagttttggtttatgtcactcaacttggacttttttttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgaacataataaataaggagttttggtttatgtcactcaacttggacttttttttaaa 320

                                                                       
Query: 121 tgtagcaatatactgaccaaggatcttgaacaacctatgatgctaccatgctttagttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagcaatatactgaccaaggatcttgaacaacctatgatgctaccatgctttagttct 380

                                                                       
Query: 181 ttctgttaaatggagtctcattcaaaccctaaagtgttgacatgaaaattaaatgagcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgttaaatggagtctcattcaaaccctaaagtgttgacatgaaaattaaatgagcac 440

                                                                       
Query: 241 atagaggtgtggcaattcaaacagggcattagacttagtcaactgggagagtcaaaatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagaggtgtggcaattcaaacagggcattagacttagtcaactgggagagtcaaaatag 500

                                                   
Query: 301 aagtaacagaaactcgtggctctgaaggaagccctcatgg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtaacagaaactcgtggctctgaaggaagccctcatgg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)