BAC Information

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BAC

Clone NameMSMg01-134K20
Chromosome12 (Build37)
Map Location 69,845,554 - 69,846,165
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134K20.T7 (MSMg01no134_k20.b1)MSMg01-134K20.TJ (MSMg01no134_k20.g1)
ACCAG341334AG341335
length1,2021,202
length of high quality
(start - end)		737 (91 - 827)464 (123 - 586)
definitionCHROMAT_FILE: MSMg01no134_k20.b1 PHD_FILE: MSMg01no134_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:19 2005CHROMAT_FILE: MSMg01no134_k20.g1 PHD_FILE: MSMg01no134_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCAATTTTTTTNNTATCAATGGGCGCTNXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTATAAATTCAATTACCCTTTGAATGTACATCTTTCAA
AACAGAATAAAAAACCACCCCTATTATACAGCATCTGCCCTCATCAATGT
GGTCATCAATGGAGTTAAGCCCTTTTCACTCTTCCAGAAGCTGCCCACAC
CCTTATAAGTGAATCTTTATTTCCTTAGGGTTTTTACTATGCTTCTCACT
TCCATCACATGAGTCTAACAGATATACAAGAATAATTTAGAAATATTTCA
TATACAAGAACAATGAAATACTCTCTATTTTATTCACTGTTAATATATTC
TATTAGGTATAGTCAACCCAATATTCTGGTTTATAACAATGTCTCTGGAA
ATAATTCTAGCTCTGAATCCTGAACAAACTGTATAGCCACTATGTGGCTT
TCCTACTCTTTTTGAAGACATAAACCAACTTTCTCAGGAGTTGTCATGAG
TGAGAATGAAGCCTGATTTTGTTAGTGAGCATTTGCTAAGCAATGGCTTC
ATAACTAAACTCAAGAAAACCCAGCCGAACTCAGGCATGTAAGTGGCCAT
ATTGATTTTTATAGAATAATTGCAAACTTGGGAATGAAGAAAGACACTGG
GCACTCATACACATAAAGTACATGGTTTTGGCCTCAAATTAAGGCAAGAG
TGGAAGAATTCACACCTAGAGGTCCTCAAACATAGTAAGGTAGCATGATG
TGCTGCTGACCATATAAATTCAGAAGATAATCCAAAACCAAAGGGAAATG
TGAAGAAGTAATTTGCCCCTTGCAGTAGCTCTAAAATCAACTTTAGAAAA
AAGAAAATCTCTAGGAAGTTAGAATTAAGAGTCAAAATGCTTAAACTAAC
TAGTTTCACATACAGGACTGTTTTCCTGAACAAAATTTCCCCCGGAAAAT
TCCTTTAAAACCCGCCCTCCCAAGGGAATACCCCCTTACAGCCCTATTTG
AAGAAATCCCTTATTATTTCCCCGGGTTTCAGTTGTAGGGAAGGGCCTGA
ATATATTTTTTGTTGGGGGGGCAAGTGTTCCCCAAAACAAATTTTCGATG
CCCATCTTTTATCATTTTTAATAAACACTGTTTAAATAGTCTCTTCAATT
ACACTAAANCTGGATTATTTTTTTGTTTTTTCTCTCTTCCTTTATATTCT
TT

CCTTTCTTTTTTTAACCATGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGATCTTTCAAAACTTTT
ATCATGAATGGGTGTTGCCTCTTGTCAAATGCTTTCCCTGCATCTAACGA
GATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACAT
TGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCT
ACTTGGTCAGGATGGATGATTGCTTTAATGTGCTCTTGGATTCGGTTAGC
AAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTC
TGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTA
ATATTGTCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTT
GTGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGAT
AGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGA
CTATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATG
GTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATT
TGTCCATTTCGTCCAGGTTTTCCATGTTTGTTGAGTATAGTCTTTTGTAC
AACGATCTGTATGCCGTTTTGTATTTCTTCTTTATTTTTTTTTATCCCCC
CTCTTTTTATTCTTTTTTATATTTATTTATATCTTCTCTATTATCTTCTT
TTTTTTTTTTTTACACTTTTTTCTTTTTCTCTTTTCCTGTTTTTTTTTTT
TTTTCTTTTTCTTTTTTTTTATTTTTTTCTTTTTTTCTTTTTTTTTATTT
CACTTCTTATCTTTTTTCTTTTTTTCTTTATTCTTCTTTCTTCTTTTCTC
TCTACTTTTTTTTTTTGTCTTTATTCTCTTTTCTATTTTTCTCTATTCTC
TTTGTTTTTATCTTCATTCCTCTTTTTTATTTTCACTTTATTTATTATTC
TCTTTTTTTCTATATTTTTATCTTATTTTTTCTCTCTTGATTTTTTCTTT
ATTTTTCTTTATATTTTCTTTTCTTTCTTTTTTCTCTCCTCTTCTTCTCT
CTATTTTTNTCTTCATCATTCTCTTACTATTTTTATCTTTCTCTTTCTTT
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_k20.b1 MSMg01no134_k20.b1 CHROMAT_FILE:
MSMg01no134_k20.b1 PHD_FILE: MSMg01no134_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:19 2005
         (737 letters)



>mm_chr12_69845354_69846490
          Length = 1137

 Score = 1168 bits (604), Expect = 0.0
 Identities = 610/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctttcaaaacagaataaaaaaccacccctattatacagcatctgccctcatcaatgt 60
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 201 catctttcaaaacagaataaaaaaccacccagattatacagcatctgccctcatcaatgt 260

                                                                       
Query: 61  ggtcatcaatggagttaagcccttttcactcttccagaagctgcccacacccttataagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcatcaatggagttaagcccttttcactcttccagaagctgcccacacccttataagt 320

                                                                       
Query: 121 gaatctttatttccttagggtttttactatgcttctcacttccatcacatgagtctaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatctttatttccttagggtttttactatgcttctcacttccatcacatgagtctaaca 380

                                                                       
Query: 181 gatatacaagaataatttagaaatatttcatatacaagaacaatgaaatactctctattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatacaagaataatttagaaatatttcatatacaagaacaatgaaatactctctattt 440

                                                                       
Query: 241 tattcactgttaatatattctattaggtatagtcaacccaatattctggtttataacaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattcactgttaatatattctattaggtatagtcaacccaatattctggtttataacaat 500

                                                                       
Query: 301 gtctctggaaataattctagctctgaatcctgaacaaactgtatagccactatgtggctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctctggaaataattctagctctgaatcctgaacaaactgtatagccactatgtggctt 560

                                                                       
Query: 361 tcctactctttttgaagacataaaccaactttctcaggagttgtcatgagtgagaatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctactctttttgaagacataaaccaactttctcaggagttgtcatgagtgagaatgaa 620

                                                                       
Query: 421 gcctgattttgttagtgagcatttgctaagcaatggcttcataactaaactcaagaaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctgattttgttagtgagcatttgctaagcaatggcttcataactaaactcaagaaaac 680

                                                                       
Query: 481 ccagccgaactcaggcatgtaagtggccatattgatttttatagaataattgcaaacttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagccgaactcaggcatgtaagtggccatattgatttttatagaataattgcaaacttg 740

                                                                       
Query: 541 ggaatgaagaaagacactgggcactcatacacataaagtacatggttttggcctcaaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaatgaagaaagacactgggcactcatacacataaagtacatggttttggcctcaaatt 800

                       
Query: 601 aaggcaagagtg 612
           ||||||||||||
Sbjct: 801 aaggcaagagtg 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 737
Length of database: 1137
Length adjustment: 10
Effective length of query: 727
Effective length of database: 1127
Effective search space:   819329
Effective search space used:   819329
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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