BAC Information

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BAC

Clone NameMSMg01-134M10
Chromosome12 (Build37)
Map Location 98,430,628 - 98,430,967
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039664, EG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134M10.T7 (MSMg01no134_m10.b1)MSMg01-134M10.TJ (MSMg01no134_m10.g1)
ACCAG341405AG341406
length1,1991,222
length of high quality
(start - end)		772 (39 - 810)714 (79 - 792)
definitionCHROMAT_FILE: MSMg01no134_m10.b1 PHD_FILE: MSMg01no134_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:31 2005CHROMAT_FILE: MSMg01no134_m10.g1 PHD_FILE: MSMg01no134_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCATTTTTTTNTTNNCCATTGGCGCTAAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTGCTACCAAGAATTCTCCATAATACAGACAATCGGGTCC
TGACTTTTGAGAATACCCTGAGAAGCAAAAACACTACTAGGACCATTTGT
ATGATACTTTAAGTTAAAAAAAAAAAAGAAAAACTCTGATTCATGCTTAG
ATAATCTAGAACAATTATCTGTGATTGCTAAGAGATCAGCATCCTTGAGT
TAACTCTTTTCTGTTTCACTTCAACAATAAGAATGTTGAGTGCACAGAAG
CTGTGGTCCAAGGTGGCCAAACCTAAAAGTCATGCTAGCAGTTTGACAGT
ATAGAAGAGTCTCTATATACTATTGGTTTAAAAATCATGAAAGTCCAAGA
CAGGATCATGGAAAGAAGATGAGACTTTGCTCTGAGCAACAGGATTAGAG
TCCATGTGGCAAGGCCAGGAGATGCCTATGGCGAAGGTGCAGCCTTAGTT
GCAATGGAGGATCCTAGGACATTGGATGACTGCCAGTGTCAGAGTCAGGT
GTGAAGTGATGGAGCCAGTTTAAAGCTGCAGCGCAACTGGTGTGTGCTGT
GGATACATAGATGGAGAGGAAAGCTGCCCAAACACTTTGTAACACAGAAG
GTTATACACGAGTCCTAGATGTCAGATATTGAGCTACAGAATTTGGATTT
TTCACTGTTGGATTTTGACTTAACTTTGATCATACTTATTTGGCCTCATT
TCTTTTCTTTTATAAATGAAAAACAATGTGAGTTTCTATTTTACAGGAAT
ACACAGCTGAGAGAATTTGGATTTTAAGACAAGGATTGAAGAAGTTGGAC
TATGATTTATATTAGAATATTAACCCGAGACTTTACTTATAGAGAATGAA
CAGTTATAGCCTAATTGGGGTGTTTGTGGTGCCAGTTTACCATTATAAAA
ACCTCTTAATTATTCTTTTTTGTTTAATGGGATCAATCTTAAAATCTCTT
AAAAAAAAAATTCATCTTTTCATTTCTGTCTTTTATTTTGCTCTCCAATT
TTTTTCTTCCTTTTCTTTTTCTTCTCTTCTTTCTCCCTTAATTTTCTTTC
TCTTCCTGGTTTTCTTTTTTTCTCTTTTTCTTTTTCTAATATCTCTTTTA
CTCTCTCTCACTTCTTTACTACTTTTTTCTCTTTTCTTTCTCTTTTTTT

NCCCGATTCTTTTTTTTAACAAGTGAGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAGAGAGAGACAAATTTC
TCTAGGAAGAGGAAATAGAACATAAAATCATGGGTGGACATATTGGGGAG
GGTTACTGCAACTGGAGGATCAAATGAGGAGGAAAACAGATGATCAGGAG
AAAGATTGGGATAGCAGAAGAACAGCTAAAATTATGGGTAATTTGAGGGG
TTGCATGGAAACTTGCTACAGTATACGCTTCCTAAATTATGTACATATCT
CAAGAGTATTTAAATGAAATCTACAAATAATAGAGGAGGCAGAGACAATG
CTAAACATCTTTCATCAGTAAATAAAGCTTACTGAATGAGGAATGGGTCA
CATCTAATCAAGTTGTTGGTCAAAGGGTTTTCAAGACAATTTCCAAACAC
TTTGCAAAGGCTACATGTTTCTATTTGCAAACTGATGGCAGGGCCCTACT
GCTGAAAATAACATCTAGTTGTCATTGGACATGGAGAAGTCAAACAGGTA
CTGGTACAGAGCTTTCAAACCTATTGAATTGTGTTCTCCTTACAGGAAGA
TATTCTGCATGCTATCAAATAAAAGAAACATAAACCTGAAGTCAGCTACA
AAGCCGTCAATCCACAATAGTGTCCTGACAGTAAGATGCACTAGTGCAAT
GCTGACCCAAATCTTGTGGTAACACCAATCTCTGATTTAACTAAGTCCCA
CTCCATGAGATGGAACACATATCCATCAAGAAACAGAGACAAAGTAGCCC
AGAGACTCAGAGGAAGTCCAAATGTGACTTTCTTCAAAGTAGCAATGCAC
AGATAGTCAAAGCTATCTGATTAAGAAGAGAGCTTTGAGAAAAGATCAAA
GAAGTTGATCCCAATGTTTTTAACAATATGAAAGCTCTGATCAACCATTT
TCGGAGACTGTTTAAAATCTTTTTTTAAAAAATAATCCAAAAGTCTTCTG
TCGGGACAAATGAATAATAAAACTTTTCTGGGTTTCCTTTAGTAAAGGAA
AAGGTGTATTGTCCGTTTTCCCCTCCCCCCCAATCCGTTATTAATTTTAA
TAAGGCTTACTCCTACTTTCTCTCCTTTTATTTTATATTTCTTCTCTTTT
TTCTCCTCTCTTTTTTTTTTTACTTTTCTTTATCTCTTTTATTAATTCCT
CTTTGCTATCAATATTTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_m10.b1 MSMg01no134_m10.b1 CHROMAT_FILE:
MSMg01no134_m10.b1 PHD_FILE: MSMg01no134_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:31 2005
         (772 letters)



>mm_chr12_98430628_98431800
          Length = 1173

 Score =  526 bits (272), Expect = e-153
 Identities = 321/342 (93%), Gaps = 11/342 (3%)
 Strand = Plus / Minus

                                                                       
Query: 18  gaattctgctaccaagaattct---ccataatacagacaatcgggtcctgacttttgaga 74
           ||||||||||||||||||||||     | |||| ||||||||||||||||||||||||||
Sbjct: 340 gaattctgctaccaagaattctgaa--agaatatagacaatcgggtcctgacttttgaga 283

                                                                       
Query: 75  ataccctgagaagcaaaaacactactaggaccatttgtatgatactttaagttaaaaaaa 134
           ||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 282 atacaatgagaagcaaaaacactactaggacaatttgtatgatactttaagttaaaaaaa 223

                                                                       
Query: 135 aa-----aaagaaaaactctgattcatgcttagataatctagaacaattatctgtgattg 189
           ||     |||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 222 aaaaaacaaagaaaaactctgattcatgcgtagataatctagaacaattatctgtgactg 163

                                                                       
Query: 190 ctaagagatcagcatccttgagttaactcttttctgtttcacttcaacaataagaatgtt 249
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 162 ctaagagatcagcatccttgagttaacttttttctatttcacttcaacaataagaatgtt 103

                                                                       
Query: 250 gagtgcacagaagctgtggtccaaggtggccaaacctaaaagtcatgctagcagtttgac 309
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gagtgtacagaagctgtggtccaaggtggccaaacctaaaagtcatgctagcagtttgac 43

                                                     
Query: 310 agtatagaagagtct-ctatatactattggtttaaaaatcat 350
           ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 42  agtatagaagagtctcctatatactattggtttaaaaatcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1173
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1163
Effective search space:   886206
Effective search space used:   886206
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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