BAC Information

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BAC

Clone NameMSMg01-135B08
Chromosome12 (Build37)
Map Location 30,526,938 - 30,709,854
singlet/doubletdoublet
Overlap geneMyt1l, Pxdn
Upstream geneTssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream geneTpo, Sntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135B08.T7 (MSMg01no135_b08.b1)MSMg01-135B08.TJ (MSMg01no135_b08.g1)
ACCAG341635AG341636
length657708
length of high quality
(start - end)		406 (39 - 444)641 (68 - 708)
definitionCHROMAT_FILE: MSMg01no135_b08.b1 PHD_FILE: MSMg01no135_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:07 2005CHROMAT_FILE: MSMg01no135_b08.g1 PHD_FILE: MSMg01no135_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,526,938 - 30,527,339)(30,709,214 - 30,709,854)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTT
CCTCAACTGCCTGTGTCATGTCTTACCGACATTCTTTCTGAAAGTGAGAT
AAAATGATACAATACATTTTAAGTATTCTATTACTTCTTTTTTATTTCTA
GTATTGACTTAGTCAGATACTTTATTTGGAATATATTATTAAATCAGCCT
GTTAGCCTGTCCTTTTGGTGGGGGGAGCTAGGACTAAAGTCTAATCCATG
AAAGGTCCTGAATTCTTGATAGATGAAAGAAAACATGTGTACTGGGATAA
ACATGCGTCACGTTGCATGGGCAGCCATAGGAAAGCACGCTGATGTTTGT
TTGTTTATTTTCAGGCCAATGTGCTTTGTCAAACAGCTTGAGATTCCTCA
GTATGGCTACAGAAACAATGTTCCCACAACCACACCACGCTCCAACCTGG
CCAAGGGAGCTTGAGAAAATACTCCAAGAATTTCGTTTGGAGTCCAACGG
TTTACAACCACCCCTTCTTTATGGGCAAAAGAAGCCTTAAGCTCCCCCAG
GGGGGCGAAACACGGGGGAAATTTTCCCCCCCAAAGGAAATATTACAAAA
GGGGATAGAGAGGGGGGCCCACCCCTTTTTTTTTCTGGTGAAAAAACAAC
TGTTTTG

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGGTTATACTCCTTTGTCTTACCACTTTAAAA
TGTGTTGTTCTCTGGAGGAGTTCTAGGGAACCATCTAATCATTTGAATAT
CTAATATGTTTTTCTGCAGCTTGTTTTCAGAACTACAGTCTAAAGGATGA
CGTAAGGGCACTGGGTATTTTAATTAGCACGGGACTTTCATATTTTTAAT
CTAGTCCTCCCTATCCTGTGAGAGGAAAAGGCTTCCAGCTTCCACAGCCT
CTCCACCTCACAGCTGAGGACAATGAAACCCAAGGAGACCAGGACTGTTT
TGAGCTCTGGCTGAAAACACAGCCTAGAGTAAATAAAAATCACATGTTAT
GTTGTGAGAAAGGAGAGTGATGAAGAGCAACAGTGACTCACCCCAATAGC
TGCACTGGTTGTACAAGACCTACACAAGGGAGCAGACAGTGATCCCCAAG
AGATTCCTGGAAATGCCAAAGTGAAGAATAAAGGAGGCTGTGTTTCAAAA
GCAACTGTGGCTGGAACAGCTCAACCGAGCTGGCCTAAGGATAGCAGTCT
AGGCTCTATGACTGAGGTAGCCTTCTGCAGGCACAGACCATTCCTTTCTA
GCTCACAGAGACTGGGCTGGGGACTGAGACCCTCGTACCCAGGGACATTG
ACTATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_b08.b1 MSMg01no135_b08.b1 CHROMAT_FILE:
MSMg01no135_b08.b1 PHD_FILE: MSMg01no135_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:07 2005
         (406 letters)



>mm_chr12_30526734_30527539
          Length = 806

 Score =  777 bits (402), Expect = 0.0
 Identities = 402/402 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcctcaactgcctgtgtcatgtcttaccgacattctttctgaaagtgagataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctcaactgcctgtgtcatgtcttaccgacattctttctgaaagtgagataa 264

                                                                       
Query: 65  aatgatacaatacattttaagtattctattacttcttttttatttctagtattgacttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgatacaatacattttaagtattctattacttcttttttatttctagtattgacttag 324

                                                                       
Query: 125 tcagatactttatttggaatatattattaaatcagcctgttagcctgtccttttggtggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagatactttatttggaatatattattaaatcagcctgttagcctgtccttttggtggg 384

                                                                       
Query: 185 gggagctaggactaaagtctaatccatgaaaggtcctgaattcttgatagatgaaagaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggagctaggactaaagtctaatccatgaaaggtcctgaattcttgatagatgaaagaaa 444

                                                                       
Query: 245 acatgtgtactgggataaacatgcgtcacgttgcatgggcagccataggaaagcacgctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatgtgtactgggataaacatgcgtcacgttgcatgggcagccataggaaagcacgctg 504

                                                                       
Query: 305 atgtttgtttgtttattttcaggccaatgtgctttgtcaaacagcttgagattcctcagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtttgtttgtttattttcaggccaatgtgctttgtcaaacagcttgagattcctcagt 564

                                                     
Query: 365 atggctacagaaacaatgttcccacaaccacaccacgctcca 406
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggctacagaaacaatgttcccacaaccacaccacgctcca 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no135_b08.g1 MSMg01no135_b08.g1 CHROMAT_FILE:
MSMg01no135_b08.g1 PHD_FILE: MSMg01no135_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:07 2005
         (641 letters)



>mm_chr12_30709014_30710054
          Length = 1041

 Score = 1239 bits (641), Expect = 0.0
 Identities = 641/641 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggttatactcctttgtcttaccactttaaaatgtgttgttctctggaggagttctagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttggttatactcctttgtcttaccactttaaaatgtgttgttctctggaggagttctagg 782

                                                                       
Query: 61  gaaccatctaatcatttgaatatctaatatgtttttctgcagcttgttttcagaactaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaaccatctaatcatttgaatatctaatatgtttttctgcagcttgttttcagaactaca 722

                                                                       
Query: 121 gtctaaaggatgacgtaagggcactgggtattttaattagcacgggactttcatattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gtctaaaggatgacgtaagggcactgggtattttaattagcacgggactttcatattttt 662

                                                                       
Query: 181 aatctagtcctccctatcctgtgagaggaaaaggcttccagcttccacagcctctccacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aatctagtcctccctatcctgtgagaggaaaaggcttccagcttccacagcctctccacc 602

                                                                       
Query: 241 tcacagctgaggacaatgaaacccaaggagaccaggactgttttgagctctggctgaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcacagctgaggacaatgaaacccaaggagaccaggactgttttgagctctggctgaaaa 542

                                                                       
Query: 301 cacagcctagagtaaataaaaatcacatgttatgttgtgagaaaggagagtgatgaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cacagcctagagtaaataaaaatcacatgttatgttgtgagaaaggagagtgatgaagag 482

                                                                       
Query: 361 caacagtgactcaccccaatagctgcactggttgtacaagacctacacaagggagcagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caacagtgactcaccccaatagctgcactggttgtacaagacctacacaagggagcagac 422

                                                                       
Query: 421 agtgatccccaagagattcctggaaatgccaaagtgaagaataaaggaggctgtgtttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agtgatccccaagagattcctggaaatgccaaagtgaagaataaaggaggctgtgtttca 362

                                                                       
Query: 481 aaagcaactgtggctggaacagctcaaccgagctggcctaaggatagcagtctaggctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaagcaactgtggctggaacagctcaaccgagctggcctaaggatagcagtctaggctct 302

                                                                       
Query: 541 atgactgaggtagccttctgcaggcacagaccattcctttctagctcacagagactgggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgactgaggtagccttctgcaggcacagaccattcctttctagctcacagagactgggc 242

                                                    
Query: 601 tggggactgagaccctcgtacccagggacattgactattaa 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggggactgagaccctcgtacccagggacattgactattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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