BAC Information

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BAC

Clone NameMSMg01-135I10
Chromosome12 (Build37)
Map Location 48,927,176 - 48,927,562
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039190, EG664891
Downstream geneGm1818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135I10.T7 (MSMg01no135_i10.b1)MSMg01-135I10.TJ (MSMg01no135_i10.g1)
ACCAG341962AG341963
length874725
length of high quality
(start - end)
---387 (76 - 462)
definitionCHROMAT_FILE: MSMg01no135_i10.b1 PHD_FILE: MSMg01no135_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:41 2005CHROMAT_FILE: MSMg01no135_i10.g1 PHD_FILE: MSMg01no135_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCANGACTACGCGGAAT
TCACCTCGGTGTTACATGAAGAAGGAGTTTGAGAACAGACTGAAGGAGTT
GAGGGGTTTGCAGTCCCATGGACGGAGCAACAGTGTCTACAGGCCAGACC
CACTGGATCTGGCAGGGACTGACCCACCAACTAAAGGATATTGCACTGAC
TGCATATGAGCCACAAGATGGCCTTGTTGTACATCAGTGGTAGGAGAGTA
CTTTGGTTCTGATAACGTTCGATGCTCCAGTGTATATTAATGCCCCACCC
GTAACACAAAAGTGAGATATTTATCTTACTCCACCCTCCTTACATTCACC
TCACATTTCTAGCACCCACTACACGATCACACTCCACTCAAAACTCTTAT
ATTATTATTATTAACTATATAATATCCATAACAAACATAACCTTCATTTC
ACTCTCCTTATTTTATTACCCACATTTAATCTACTCTTATAAACCTTCCT
ATTTTGTGCTTATATTTTTATACTGCTCCCCCACTATCGATATTATCTCC
CCCTTCTAAACCCACCCTAAAATCTCCTAATTTACTACTTCTTACCTAAT
TAATAACACTATTATCGAATTTTATACTCAATATAATTTCTACACACACT
TCGCCATAAATTTACCATCCCTCTTTGTACTCTCCTACAACTTCTCTTCA
ATAATAACTCAATTTAATCTCTTATCCTCCCTTCCCTCCCACTATTTTAT
TTTCCTAACCTAATATCCTAAATTATTAATCTCTAACCTCTACCAACCCT
TCACCCTTTTACCGTCCCCCCTTCTTTTTCCCATTACCCTTCCTCTCACC
CTATTCCTTTTTACCCCCACCCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTTAACTGAATCTCTTTGGTA
ATTCTGGTAATGAAAAATAGTATATTTAAATTAATACCACTTATATTTTC
ACTTTTTGAAAATCATGCCCTTCTCCAGCAATATACTTTCATTTTACTAC
TCTCTATTTGTCACTATTTAGTTGATTCCAAGAATTGCTGGTATATAGAT
ATAATGCATTAGAAAAATAAATGTTTCCAGATAACTATTACTTTAACTAT
ATTTTAAAATTATTTTTTAACTTTTTCTCATATTAGGTAGTTAATTCTTT
TTTAAAAATGTTTTATTAGGTATTTTCCTCATTTACATTTCGAATGCTAT
CCCAAAAGTTCCCCATACCCTCCCCCTGACTCCCATACCCCCCTACTCCC
ACCTCCCGGCCCTGGCGTTCCCCTGCACTGAGGCAGATAAAGTTTGCACG
ACCAATGGGCCCTCTCTTTCCATTGATGGCCAGCTAGGAAAATCTGATAC
ATATGGCGCTAAGAGACCCGAAGTTCCAGGGGGTAATGGGTCAGTCCATA
CTGGTTGGTTCCCCCTATAAGGTTTGCAAATCCCCCCTAATTCCCTGGGA
AAAAATTTCCCCAGCCTCCCCCCCCCGGGGGGGCCCCGGGGATATCCTTT
CCCAAAAATTTTGTTGTGGTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_i10.g1 MSMg01no135_i10.g1 CHROMAT_FILE:
MSMg01no135_i10.g1 PHD_FILE: MSMg01no135_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:41 2005
         (387 letters)



>mm_chr12_48926976_48927762
          Length = 787

 Score =  712 bits (368), Expect = 0.0
 Identities = 383/388 (98%), Gaps = 2/388 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgttaactgaatctctttggtaattctggtaatgaaaaatagtatatttaaattaat 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ttttgttaactgaatctctttggtaattctggtaatgaaaaatactatatttaaattaat 260

                                                                       
Query: 61  accacttatattttcactttttgaaaatcatgcccttctccagcaatatactttcatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accacttatattttcactttttgaaaatcatgcccttctccagcaatatactttcatttt 320

                                                                       
Query: 121 actactctctatttgtcactatttagttgattccaagaattgctggtatatagatataat 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 actactctctatttgtcactatttagttgattccaagaactgctggtatatagatataat 380

                                                                       
Query: 181 gcattagaaaaataaatgtttccagataactattactttaactatattttaaaattattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gcattagaaaaataaatgtttccagataactattactttaactatatttcaaaattattt 440

                                                                       
Query: 241 ttt-aactttttctcatattaggtagttaattcttttttaaaaatgttttattaggtatt 299
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttaactttttctcatattaggtagttaattcttttttaaaaatgttttattaggtatt 500

                                                                       
Query: 300 ttcctcatttacatttcgaatgctatcccaaaagttccccataccctccccctgactccc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctcatttacatttcgaatgctatcccaaaagttccccataccctccccctgactccc 560

                                       
Query: 360 atacccccctactcccacctcccggccc 387
           |||||||| |||||||||||||||||||
Sbjct: 561 ataccccc-tactcccacctcccggccc 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)