Query= MSMg01no136_b05.b1 MSMg01no136_b05.b1 CHROMAT_FILE:
MSMg01no136_b05.b1 PHD_FILE: MSMg01no136_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:20 2005
(674 letters)
>mm_chr12_42052042_42053115
Length = 1074
Score = 1222 bits (632), Expect = 0.0
Identities = 665/684 (97%), Gaps = 13/684 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgcaccgccgcctgactattgtcttgagaatgtttagttctcaagtgtcttat 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcaccgaggcctgactattgtcttgagaatgtttagttctcaagtgtcttat 263
Query: 64 ttacttcctcatttctgggataaaatacctcaacaaatgtaacttaaaaaagaaagtact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttacttcctcatttctgggataaaatacctcaacaaatgtaacttaaaaaagaaagtact 323
Query: 124 gattttggctcccagtcccagaactacaatcttttattgtggaaagacatggcagacaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gattttggctcccagtcccagaactacaatcttttattgtggaaagacatggcagacaag 383
Query: 184 aaaggccatcatgggggaaactggaaattgagtcattacacttcctgtacactccaagtc 243
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 aaaggccatcatgcgggaaactggaaattgagtcgttacacttcctgtacactccaagtc 443
Query: 244 tagagtgaacaggtgcagtcagattataaagcctcaagtcccacatcctgtgggttatct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagagtgaacaggtgcagtcagattataaagcctcaagtcccacatcctgtgggttatct 503
Query: 304 tctgccctgccgcctgaaggttatataacctcccagaacagtgctgcaaattggggatta 363
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctgccctgcagcctgaaggttatataacctcccagaacagtgctgcaaattggggatta 563
Query: 364 agtattcaaatatgggagtctgtaggggcccatttcaaattcaaatgacaacatcaggac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtattcaaatatgggagtctgtaggggcccatttcaaattcaaatgacaacatcaggac 623
Query: 424 atgttgaaatttgctcttgcaccagcatcctgttcttttcaccagttttatccacttgtt 483
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgttgaaatttgctcttgcactagcatcctgttcttttcaccagttttatccacttgtt 683
Query: 484 tgttaaataacatggccagtcttaatttgggagcctctttgggcagaatttattttgtat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgttaaataacatggccagtcttaatttgggagcctctttgggcagaatttattttgtat 743
Query: 544 gtggcccagggccgggtgacagtaagtgggtccttgggagtggtagtggta--------- 594
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtggcccagggccgggtgacagtaagtgggtccttgggagtggtagtggtattctatgtt 803
Query: 595 ----gtgcatgctttgactgtaacttagggcctaaccctatgtccttccactctacatta 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctcagtgcatgctttgactgtaacttagggcctaaccctatgtccttccactctacatta 863
Query: 651 acccttcctcagatacttatttgc 674
||||||||||||||||||||||||
Sbjct: 864 acccttcctcagatacttatttgc 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_b05.g1 MSMg01no136_b05.g1 CHROMAT_FILE:
MSMg01no136_b05.g1 PHD_FILE: MSMg01no136_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:21 2005
(608 letters)
>mm_chr12_42236600_42237607
Length = 1008
Score = 1152 bits (596), Expect = 0.0
Identities = 605/608 (99%)
Strand = Plus / Minus
Query: 1 tctgaacaatatttagattcctttggaaaacggaagttggctcagagcgctctcgtcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tctgaacaatatttagattcctttggaaaacggaagttggctcagagcgctctcgtcagc 749
Query: 61 acagacctgctgggtgctgctctaatgttcttgttaatggggctagattacagtacgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 748 acagacctgctgggtgctgctctaatgttcttgttaatggggctagattacagtatgaga 689
Query: 121 gggtgacagagtcccaatttttcctaaaatgtgtttttaacttctggaaacatttgagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gggtgacagagtcccaatttttcctaaaatgtgtttttaacttctggaaacatttgagca 629
Query: 181 ctattttttttcttcacttttcattctagccaagactggaatcaaatatcagattttagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctattttttttcttcacttttcattctagccaagactggaatcaaatatcagattttagc 569
Query: 241 tataaggatagatttgcagagatttgggctatgatcaaaaccagaaatgccaaaaaatca 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 568 tataaggatagatttgcagagatttgggctatgatcaaaatcagaaatgccaaaaaatca 509
Query: 301 tcagacaaaatctatttctatagaatatttaagaataaagaaatctggggcaatttcccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcagacaaaatctatttctatagaatatttaagaataaagaaatctggggcaatttcccc 449
Query: 361 tatggaactgactgatgagaacctttcaacagaattctagggctcaaagatcagcaggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tatggaactgactgatgagaacctttcaacagaattctagggctcaaagatcagcaggag 389
Query: 421 aggacgcttgcagcaggacggtgcagacaatgctggaaactggagttctgtcagtttcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aggacgcttgcagcaggacggtgcagacaatgctggaaactggagttctgtcagtttcca 329
Query: 481 tgtcacactagcagagaaacttcagggtcacctaaaataaagtttgtttacagactctta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtcacactagcagagaaacttcagggtcacctaaaataaagtttgtttacagactctta 269
Query: 541 aaagttctattcataaaactaatctgtagctgccaaattagatggccgatactctgattt 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 268 aaagttctattcataaaactaatctgtagctgccaaattagatggctgatactctgattt 209
Query: 601 gaatactc 608
||||||||
Sbjct: 208 gaatactc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
