BAC Information

Click to search

BAC

Clone NameMSMg01-137A07
Chromosome12 (Build37)
Map Location 8,837,854 - 8,838,234
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1
Downstream geneLaptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137A07.T7 (MSMg01no137_a07.b1)MSMg01-137A07.TJ (MSMg01no137_a07.g1)
ACCAG343061AG343062
length730919
length of high quality
(start - end)
385 (43 - 427)---
definitionCHROMAT_FILE: MSMg01no137_a07.b1 PHD_FILE: MSMg01no137_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:34 2005CHROMAT_FILE: MSMg01no137_a07.g1 PHD_FILE: MSMg01no137_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGAGGAGTACCTCGGCTGCCAGTTTCCAGAAGAACTGTTTGGTGCCT
CTGTTCCCATCCTGTCAGCTGTGTTTCACAGGCTGGTCTGGTCTACAGTG
TCCCCAGCCAGGGTCCTTGACCTGCCTCTGGAATCACAGCCTGCTATAAA
TGAGGCCAAAGATCCAGCCTGCTAAATGCTGAAATGAGGTCATTAAGGGC
CAAAGGACCACTTTTGCAACATGATTGCTAAAGAAGCCAGGATACAGAGG
GCAAGGTGAGACATGAAGGTGATGTCCTGGAGGGTATGGATGGAGCCAGA
TGGGCAGAAACCAGGTTCAGGAAGAAAGGAGGCCAGCCCCAAGGTCCCAG
GGTAAGTGGTGGTGCACTCACGTGGGGAGGCAGGCCAGGAGGAAGGAGCT
GAGCAGTCTGACTAGTGATTGATGTGAGGGAGAACAGCAGATGCACTCCA
GGGACTCGGGATACTGGGGGAGTGCCACCATGCTTCTGATCCCTGGCTTC
TCTCCTTATTTCCCTTTTTCTGCCATTCAGTATCCATCATGGCCCTTATA
GGGTACCCCATTTCGCTCAAAGTGACAGGACGCCACATGAAGCGTGGTCC
CTATCTTGGTGGCCGCATCATGGAAAAAGGTCATTGGTAAAAAGGGACCG
AAGTGCCTGAATTGGGAACCGGAACAATGG
GAGGGGGAAGGGAACCACCGCGCAGAGCGGAATTCATGAAGAGGAAGGAA
GGGAAAGAAAAGAAGGAGGGGAAGAGGGAGGAAGAGGGAGACAAGAAGGA
AAGGAGGAAGAGGGTGAGAAAAGGGGGAGAGGGGAGGAAGAAAGACGAAG
ATAGAAGGTGGAGGAGAGAGAGAGAAAAAAAAGGAGGGAGGAGAGAGAAA
AAGAGGGACAGAGAGAAAGAAGAAGAAGAAAAAGAATGAGGAGGGGGAGA
AAAAAACAAGGAGGGAGAGGTGGGGGGGGGAGGGCCGCCTCCTCTGTGCG
TTGGGGGGGGGGGTGGTGTCGGGGGATGTGTACATTTTAAATGGTGTGGA
TGGGTGTTTTGTGGGTGTGGGAGAAAAGAGGGGGAGGGTGGGGAGAGGGC
CGGGTGTGTTTTTTTTGTGTTTGGGGTGGGGGGAGGGGTTCCGGGGGTGT
GGTGGCTCTGGTTGGGGGTGGGGGTGTGGGGGGAGGGNNAGAAAATTTTT
TTTTTGGTCTTGTCCTTTCCCCCCACCACGAATAGGGAGGCCTGCTTTTA
AGGATAAAAAAANAAGTAAAAAATAAAGGTTTTTTGGTTTTGTTGGGTTT
GTTGTTTGTGTGGGTTTTTTTTCTTTTTGTGGGTGTTTATTATAATAAAT
AAGACACACCTTCCCTTCTTTTTATGTATTTTTTGTTTTATATAGGATAA
ACTAATTATTTATTATTTTGATTGGGGAGGGGGGGGGAGGAATAATATAT
TTATTTTTCTCTCTCCTCCGCCCCCCCGCCCCTCTCCCTGCTCGTGGGTG
GTGTTGGTGGTGTAGGTGAGTTGTGTGTCTGTTATTTAACGTTATAGTAG
ATTAGTTTTGTGTTGTTGTTGTTGTGTTATGTTTGCTCACTCATATTTAG
AGCTATTACATATTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_a07.b1 MSMg01no137_a07.b1 CHROMAT_FILE:
MSMg01no137_a07.b1 PHD_FILE: MSMg01no137_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:34 2005
         (385 letters)



>mm_chr12_8837650_8838434
          Length = 785

 Score =  692 bits (358), Expect = 0.0
 Identities = 376/382 (98%), Gaps = 2/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgaggagta-cctcggctgccagtttccagaagaactgtttggtgcctctgtt 63
           |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gaattcctgaggaggagcc-cggctgccagtttccagaagaactgtttggtgcctctgtt 527

                                                                       
Query: 64  cccatcctgtcagctgtgtttcacaggctggtctggtctacagtgtccccagccagggtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cccatcctgtcagctgtgtttcacaggctggtctggtctacagtgtccccagccagggtc 467

                                                                       
Query: 124 cttgacctgcctctggaatcacagcctgctataaatgaggccaaagatccagcctgctaa 183
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cttgaccagcctctggaatcacagcctgctataaatgaggccaaagatccagcctgctaa 407

                                                                       
Query: 184 atgctgaaatgaggtcattaagggccaaaggaccacttttgcaacatgattgctaaagaa 243
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 406 atgctgaaatgaggtcattaagggccaaaggaccacttttgcaacatggttgctaaagaa 347

                                                                       
Query: 244 gccaggatacagagggcaaggtgagacatgaaggtgatgtcctggagggtatggatggag 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 346 gccaggatacagagggcaaggtgagacatgaaggtgaggtcctggagggtatggatggag 287

                                                                       
Query: 304 ccagatgggcagaaaccaggttcaggaagaaaggaggccagccccaaggtcccagggtaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccagatgggcagaaaccaggttcaggaagaaaggaggccagccccaaggtcccagggtaa 227

                                 
Query: 364 gtggtggtgcactcacgtgggg 385
           ||||||||||||||||||||||
Sbjct: 226 gtggtggtgcactcacgtgggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)