BAC Information

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BAC

Clone NameMSMg01-137G01
Chromosome12 (Build37)
Map Location 45,294,851 - 45,295,188
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081
Downstream geneLOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137G01.T7 (MSMg01no137_g01.b1)MSMg01-137G01.TJ (MSMg01no137_g01.g1)
ACCAG343324AG343325
length735742
length of high quality
(start - end)
358 (40 - 397)334 (71 - 404)
definitionCHROMAT_FILE: MSMg01no137_g01.b1 PHD_FILE: MSMg01no137_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:02 2005CHROMAT_FILE: MSMg01no137_g01.g1 PHD_FILE: MSMg01no137_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCC
ATTAAATCGCACCTTTGTAGGAATATATATATGCATATATATGTACATAC
ATATATATGCATATATATATGACAGATCCTATTCTATCCATCACATGAGG
AGAATGATACTTAAATAAAAGTGTTAATTGAAGAGATCCCTACGGAGCTG
GAGAGATGGCTCAGCAGTTAAGAGTACTGAGTGCTCTTCTAAAGGTCCTG
AGTTCAATTCCTAGCAACGCCATAGTGACTCAAAGCTATCTGTAATGGGG
TCTGATGCCCTCTTCTGGGGTGTCTGAAGACAGCTACAGCATACTCATAT
ACATAAAATAAACAAATAAGTCTTTTAGAAGAGGAGGAGGAGGTCCCAAC
CATAGTGGTCCACACCCCTGCTCTGCACATTCTCAAGACATTCTGACACA
GGGTTGTGAAGCACTCCCACCTGTTCACTGTTACCCACTCGGTCTTCGCA
AGAAGCATGTGGATTCCTTTCCCCGCCAAGGCTGGTACAACCCCAATGCG
GGATATTAGAGTGTGGGTGTTTCGAGCCCTGGATCTTTTTCTTATCCTTG
TTTCTCCCTGTACTCGGACCTTTTCTTTCGGTTCTCGTGTGCCTCGTTTT
TGTATTCCCACACTGCTTCTTCGCACTTTGTCTCCCTAGGTCCCTTTCTC
TCCCTCTCCCTCCTCCCCATCGGGGGCCCCTTCTT
TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAGGTAATATTCAAATTAGTAAAGGAAAT
TTAGGTTTGGCTGTGTCAGGGTGAAACAAAGTGGGGAGGAATTACCAGCC
AAACATTTGACTAGATAAAGGGGCAGGGACAGCAACCAATTCCAAGCAAA
AAATAATAACTTGACTTTGATATGAGAGAGAGAGAGAGAGAGAGAGAGAT
CTCCAATTAATTAACAGTACTCAGTAAGAAAGTGACAACTGAGAGTCTTT
TAACTTTTTTCCCATAAAAATGCCTGCATAATTACTGTATTTACAAACAC
TCAACAGCATTTTGATACATAGATACTAAGCAGGCAGCAAGGTTCATTTA
CTACCCAAATAGATGTTAAACTTACCTAGGCAAAAGGGCTAGGCTTGTTT
CTATACTTCATAAAATTCAGAAATTCTATCCTAGAACGTCAAGACCTATC
CAGAACAGATATTGCCACCTATATTAACTCTGCCCAGACGCTACAATATT
TACAGAGAACTTTTGCTCTTATCTAAATCAGATAATGGCATCTAATTAAA
GGTTCCAAGAAAAGAGCCTGAATGCCCTTCGCAAACCCTTATCAAATCTA
ACAATATGATACTCTCCAAATTATAAATGGGCCCAATCCCCTTAGGGCTT
TTTTTTTCTATATGGTCCCTATCCACCGCTCCGCGCCAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_g01.g1 MSMg01no137_g01.g1 CHROMAT_FILE:
MSMg01no137_g01.g1 PHD_FILE: MSMg01no137_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:02 2005
         (334 letters)



>mm_chr12_45294655_45295388
          Length = 734

 Score =  627 bits (324), Expect = 0.0
 Identities = 333/338 (98%), Gaps = 4/338 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggtaatattcaaattagtaaaggaaatttaggtttggctgtgtcagggtgaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aaaggtaatattcaaattagtaaaggaaatttaggtttggctgtgtcagggtgaaacaaa 256

                                                                       
Query: 61  gtggggaggaattaccagccaaacatttgactagataaaggggcagggacagcaaccaat 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtggggaggaattactagccaaacatttgactagataaaggggcagggacagcaaccaat 316

                                                                       
Query: 121 tccaagcaaaaaataataacttgactttgatatgagagagagagagagagagagagaga- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 317 tccaagcaaaaaataataacttgactttgatatgagagagagagagagagagagagagag 376

                                                                       
Query: 180 ---tctccaattaattaacagtactcagtaagaaagtgacaactgagagtcttttaactt 236
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agatctccaattaattaacagtactcagtaagaaagtgacaactgagagtcttttaactt 436

                                                                       
Query: 237 ttttcccataaaaatgcctgcataattactgtatttacaaacactcaacagcattttgat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttttcccataaaaatgcctgcataattactgtatttacaaacactcaacagcattttgat 496

                                                 
Query: 297 acatagatactaagcaggcagcaaggttcatttactac 334
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acatagatactaagcaggcagcaaggttcatttactac 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)