BAC Information

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BAC

Clone NameMSMg01-137K03
Chromosome12 (Build37)
Map Location 61,482,987 - 61,483,202
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137K03.T7 (MSMg01no137_k03.b1)MSMg01-137K03.TJ (MSMg01no137_k03.g1)
ACCAG343507AG343508
length901742
length of high quality
(start - end)
---215 (72 - 286)
definitionCHROMAT_FILE: MSMg01no137_k03.b1 PHD_FILE: MSMg01no137_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:23 2005CHROMAT_FILE: MSMg01no137_k03.g1 PHD_FILE: MSMg01no137_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGNNGAGGGGGCNGT
CGGAATTCCATTCTGTTTCTTTCATTACATGGCTATATNNCCANAGGGGA
AACACNAATTGTTCTCCACGCCCCACTCTAGCGGGGGGGGTTCGTATTGT
TTTCTCCCCCCAGTTCAGACTATATGGAGGCGGGGGAGATACAGACACTT
AAAAGAACATAAAAGAACAAAAATGATATGGCGTTCTTTTCTTATTAAGA
ATAGATTTTTCCCTGGAATCCCTTTCCTTGGGAAAGGTTGGGGAGGAAGC
AACTTTTTGGGGTTGGAAAAGAACCATCCTCCACCTGTAAGGGGGTTGGA
AGGGGGTTTCCCAAAAGGTCCTTCCGGGACCTTCTCTTGCCCCCAAGGGG
GAAACAGGCTGGGGGAGATTCTCTCTAAAAGAGTTTAATTCCCGTGGGGG
ACGCGGGGAGGGGGAGGGGATATACTTCTCGGGGATGTGGGGGGGGGTGG
GAAAAAAAGGGGGTGTTTTTATTTAAGATAAATGGCAACTTCTGTGGTGG
GTCTATAGGGGGGGGAAATATAGTAGAGTGAATAATGTATATCTGAGGAG
GGGGGGGGAGGAAGAGATGGGTTGTTTGTTTCTATATAAACCAAACCGGA
GCGCGGATATGTTTTTTGTGTGTTGTGGTATAATAACAACAAAAAACATT
CTCCTTAGTTTAAAGGATGGAGAGTCGGCTAGGAGTGAAAGAAACCGCCT
CCCACGCGCAGTATAATCATATATTTCATCGCCGCGAAAAGTCCGCGTTA
CATCCTATACAACAAGACTGAAAAGCGCACGGAATCGAGACAACAGAGGA
CACCAGACACAGAGGCAGATTCATTACTGTCAAACAACACACTAAAAACA
T
TACAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCTGAAATTCAGTGGCAGTTTTCACTGGGAGGTGAGAACAA
CACAGAACATGCTTATGAGTCTAGAGGTAGATTTAAACAGGGCTCCAACA
AGCTCCATACTGTATCCCAATCTGGACCATCAGATAATGCCTATGCTTAA
ACTTGACTATATAAAACCCAGTAGAGTACTATAGGCAAGGACAGAGTGGT
CTCTCTGCAGCTCTTCCTAAGAATAGAGTACCCCAGAGACTTACTTCTGC
CCTAGAGGTATAGGATTTTCTTTGTCACTGACGTACCGCCTTTTTACAAG
TTTTTGCATATTACGCACTATACGCAGCTATGACTTCTAGTTGTTTGACA
AATTTACTTTCTGCACCTCCATTTAATAAATCTTAATGAAAATTCCCTTT
AAAACACAATACAACAGAAATATTTAAGTATATTCTAAATGCCAAAATAT
TCAATTCCCTTTGACTCCATTTTTTACCTCAAACGAAGTATTTCCACTTT
AACCAAAAACGACTAGTAATTGAACCGGTAATTATATCATGTTCTACCTC
TAAGAAATCTTTACTCAGCTGAAACTTACTTGAAATATAACTTCACCTCC
ATACTAAAATTCCTGAAAAAGGACCTCTGCGACATAACACCCCCTGAACG
CCATTATACACAACCCCAAAAATCTTATTTCCGACAACAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_k03.g1 MSMg01no137_k03.g1 CHROMAT_FILE:
MSMg01no137_k03.g1 PHD_FILE: MSMg01no137_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:23 2005
         (215 letters)



>mm_chr12_61482787_61483402
          Length = 616

 Score =  402 bits (208), Expect = e-117
 Identities = 214/216 (99%), Gaps = 1/216 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcagttttcactgggaggtgagaacaacacagaacatgcttatgagtctagaggtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcagttttcactgggaggtgagaacaacacagaacatgcttatgagtctagaggtaga 260

                                                                       
Query: 61  tttaaacagggctccaacaagctccatactgtatcccaatctggaccatcagataatgcc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaacagggcttcaacaagctccatactgtatcccaatctggaccatcagataatgcc 320

                                                                       
Query: 121 t-atgcttaaacttgactatataaaacccagtagagtactataggcaaggacagagtggt 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgcttaaacttgactatataaaacccagtagagtactataggcaaggacagagtggt 380

                                               
Query: 180 ctctctgcagctcttcctaagaatagagtaccccag 215
           ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctctgcagctcttcctaagaatagagtaccccag 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 616
Length adjustment: 9
Effective length of query: 206
Effective length of database: 607
Effective search space:   125042
Effective search space used:   125042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)