BAC Information

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BAC

Clone NameMSMg01-137N10
Chromosome12 (Build37)
Map Location 121,253,331 - 121,253,974
singlet/doubletsinglet
Overlap geneGm528
Upstream geneItgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633, LOC100043017
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137N10.T7 (MSMg01no137_n10.b1)MSMg01-137N10.TJ (MSMg01no137_n10.g1)
ACCAG343661AG343662
length729710
length of high quality
(start - end)
412 (72 - 483)644 (67 - 710)
definitionCHROMAT_FILE: MSMg01no137_n10.b1 PHD_FILE: MSMg01no137_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:40 2005CHROMAT_FILE: MSMg01no137_n10.g1 PHD_FILE: MSMg01no137_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTTGCATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGTTGTATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAATATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTACAACATCCAGAAGCTGGAAAGAATCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
ATTACCACTCAGCTATTACAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGTATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATACGTACTTCTCCGATAAGTGGATATTATCCCCTAACC
TAGGATACCCCAGATATTTGATATCACTTGCTAACCCCATGAAATTCAAT
AATAATGCACACTGAATTGTGCCCCCCAC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATGAAGCTTTATATGGATTGTAATATCTTCACT
GATAGACAAGGCTTTTTGTTGCCTCACTAAAGAGCCTCTTTTATGCTTGA
GGACCTAATTTACATAATCAAATGCATCTACTTATAAGCACAAAGGATGT
ACTGGAAAAGAGAATTCATGTGATTTCTAAAGCTGGCATTATTGAGTGGA
GGCTGTATTTAGTTTATGTTTTTCCTCACTATAATACATAAAAATCCATA
TTTATAAGGTGCTTAATATTTTATAAAATGCCATTTTAGGAGCTATGGTT
TCAAATAGACAGAGGCTACAAAATTCTGCTGAAAATGGCTGTACTTATGA
ATTGCAGAGAAAACTAATTAAAAACCCCTGCTCTTAATATAATAGGGTCA
GAATTACAAAATGTGATTCCACAAATTGCCATGTAAGCTTGCAAATTGAT
CCACCTAGATTGTAGTGTTCATTGCATGGTAGCAGTGTGAGGCAAAATGA
AAAAGAAAAACTCACTTTCTCAGCCATTTCATGAGAGTGATGCAGGGAAT
GTTCCCTTTCTGAGAACATCCTCCTTTGCTCATAGCTGGCTAGACGACAA
GTGAGCCAAGAGGAGACAGTGCAGCCCCCAATGCCGATACATGCCAAAGA
CATGGAAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_n10.g1 MSMg01no137_n10.g1 CHROMAT_FILE:
MSMg01no137_n10.g1 PHD_FILE: MSMg01no137_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:41 2005
         (644 letters)



>mm_chr12_121253131_121254174
          Length = 1044

 Score = 1245 bits (644), Expect = 0.0
 Identities = 644/644 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgaagctttatatggattgtaatatcttcactgatagacaaggctttttgttgcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 aatgaagctttatatggattgtaatatcttcactgatagacaaggctttttgttgcctca 785

                                                                       
Query: 61  ctaaagagcctcttttatgcttgaggacctaatttacataatcaaatgcatctacttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ctaaagagcctcttttatgcttgaggacctaatttacataatcaaatgcatctacttata 725

                                                                       
Query: 121 agcacaaaggatgtactggaaaagagaattcatgtgatttctaaagctggcattattgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agcacaaaggatgtactggaaaagagaattcatgtgatttctaaagctggcattattgag 665

                                                                       
Query: 181 tggaggctgtatttagtttatgtttttcctcactataatacataaaaatccatatttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tggaggctgtatttagtttatgtttttcctcactataatacataaaaatccatatttata 605

                                                                       
Query: 241 aggtgcttaatattttataaaatgccattttaggagctatggtttcaaatagacagaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggtgcttaatattttataaaatgccattttaggagctatggtttcaaatagacagaggc 545

                                                                       
Query: 301 tacaaaattctgctgaaaatggctgtacttatgaattgcagagaaaactaattaaaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tacaaaattctgctgaaaatggctgtacttatgaattgcagagaaaactaattaaaaacc 485

                                                                       
Query: 361 cctgctcttaatataatagggtcagaattacaaaatgtgattccacaaattgccatgtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cctgctcttaatataatagggtcagaattacaaaatgtgattccacaaattgccatgtaa 425

                                                                       
Query: 421 gcttgcaaattgatccacctagattgtagtgttcattgcatggtagcagtgtgaggcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gcttgcaaattgatccacctagattgtagtgttcattgcatggtagcagtgtgaggcaaa 365

                                                                       
Query: 481 atgaaaaagaaaaactcactttctcagccatttcatgagagtgatgcagggaatgttccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atgaaaaagaaaaactcactttctcagccatttcatgagagtgatgcagggaatgttccc 305

                                                                       
Query: 541 tttctgagaacatcctcctttgctcatagctggctagacgacaagtgagccaagaggaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttctgagaacatcctcctttgctcatagctggctagacgacaagtgagccaagaggaga 245

                                                       
Query: 601 cagtgcagcccccaatgccgatacatgccaaagacatggaagcg 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cagtgcagcccccaatgccgatacatgccaaagacatggaagcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)