Query= MSMg01no138_h20.b1 MSMg01no138_h20.b1 CHROMAT_FILE:
MSMg01no138_h20.b1 PHD_FILE: MSMg01no138_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:32 2005
(567 letters)
>mm_chr12_56497350_56498309
Length = 960
Score = 992 bits (513), Expect = 0.0
Identities = 548/563 (97%), Gaps = 7/563 (1%)
Strand = Plus / Plus
Query: 3 ggaattctgtcttcttgccacttagagtaagaatggagggatggcaagaagtaaaggttt 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctgtcttcttggcacttagagtaagaatggagggatggcaagaagtaaaggttt 262
Query: 63 tgttctggctttctgggtgtgagcagcccggaacatcaaagactgtggagaaccagacag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgttctggctttctgggtgtgagcagcccggaacatcaaagactgtggagaaccagacag 322
Query: 123 tgtgggaaggcctgcacaggagccagcaggagcgccacaggtttctggaacagcagagct 182
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtgggaaggtctgcacaggagccagcaggagcgccacaggtttctggaacagcagagct 382
Query: 183 gcagatgagcctgaagcatgtcagaaccaatgcttctcaggcatcatcagcctaagtcca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcagatgagcctgaagcatgtcagaaccaatgcttctcaggcatcatcagcctaagtcca 442
Query: 243 ccccttgccccaggttctctgtgggcatcaggatggggccaaggctgtggccatctctca 302
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 443 ccccctgccccaggttctctgtgggcatcaggatggggccaaggctgtggtcatctctca 502
Query: 303 cgaggacagtgaggtactgcagaagcttagcatgagcaagaaacaggacaagttgcccaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cgaggacagtgaggtactgcagaagcttagcatgagcaagaaacaggacaagttgcccaa 562
Query: 363 gatatgtgatgccgatgcctttttggcctccaagtctctgatcaagtaggtcctgatacc 422
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 563 gatatgtgatgcc------tttttggcctccaagtctctgatcaagtaggtcccgatacc 616
Query: 423 ctgggtccaggcctaattaaggctggcaaggtcccttccttgctggcacacagtgaaaat 482
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 617 ctgggtccaggcctaattaaggctggcaagttcccttccttgctggcacacagtgaaaat 676
Query: 483 accgggctatattgacgaagtgaagtccacaatcaagatgaagaaggtgctgtgtctagt 542
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 677 accgggccatattgacgaagtgaagtccacaatcaagatgaagaaggtgctgtgtcta-t 735
Query: 543 tgttgctattgtttgaggatgag 565
||||||||||| |||||||||||
Sbjct: 736 tgttgctattgcttgaggatgag 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 960
Length adjustment: 10
Effective length of query: 557
Effective length of database: 950
Effective search space: 529150
Effective search space used: 529150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_h20.g1 MSMg01no138_h20.g1 CHROMAT_FILE:
MSMg01no138_h20.g1 PHD_FILE: MSMg01no138_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:32 2005
(489 letters)
>mm_chr12_56587736_56588624
Length = 889
Score = 919 bits (475), Expect = 0.0
Identities = 489/501 (97%), Gaps = 12/501 (2%)
Strand = Plus / Minus
Query: 1 aaactcctcctctcctggaagtgattaagtgagaaccagacccgaacaggaaggtacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaactcctcctctcctggaagtgattaagtgagaaccagacccgaacaggaaggtacagt 535
Query: 61 attcctgtcccaagccccacgtcttcactaaccttcctagtgtagagttttgctagacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 attcctgtcccaagccccacgtcttcactaaccttcctagtgtagagttttgctagacaa 475
Query: 121 gaaaggtcagatttctagaactttgttctgacccacccaaaatgcattccccgacctctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaaaggtcagatttctagaactttgttctgacccacccaaaatgcattccccgacctctc 415
Query: 181 atccctggacaaaaccatccaggttgtttccacattttacttacgtaagggaacattaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atccctggacaaaaccatccaggttgtttccacattttacttacgtaagggaacattaca 355
Query: 241 gaaactgaaacttgctattctgtgtgtgtttccctcctgagaagtgggactctcggtctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaaactgaaacttgctattctgtgtgtgtttccctcctgagaagtgggactctcggtctc 295
Query: 301 attcattcatttgcattgtgaagaattattctccaggatgcatagaggcacacagataag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 attcattcatttgcattgtgaagaattattctccaggatgcatagaggcacacagataag 235
Query: 361 ccggtcagggcctatctcagagccccttgct------------tagcccaccaagatcgg 408
||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 234 ccggtcagggcctatctcagagccccttgcttaggaatagaggtagcccaccaagatcgg 175
Query: 409 ggctactgtggtgaagcacagggcagacagagccagaagctgacagcagagccacccagg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ggctactgtggtgaagcacagggcagacagagccagaagctgacagcagagccacccagg 115
Query: 469 gcggagtgtgtggggaggggg 489
|||||||||||||||||||||
Sbjct: 114 gcggagtgtgtggggaggggg 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
