Query= MSMg01no139_d23.b1 MSMg01no139_d23.b1 CHROMAT_FILE:
MSMg01no139_d23.b1 PHD_FILE: MSMg01no139_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:35 2005
(300 letters)
>mm_chr12_41274756_41275455
Length = 700
Score = 466 bits (241), Expect = e-136
Identities = 274/297 (92%), Gaps = 20/297 (6%)
Strand = Plus / Plus
Query: 4 ggaattcagatgggtctcacactacagaaggcctctatgacctacttctccaatccatgg 63
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ggaattcagatgggtctcacagtacagaaggcctctatgacctacttctccaatccatgg 283
Query: 64 aaatctttttagtgcctgatgataaatagtgtgcatgtatacatgtgtgtacgtgtgtgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaatctttttagtgcctgatgataaatagtgtgcatgtatacatgtgtgtac-------- 335
Query: 124 gtgtatatgtgtgtgtgtgtgtgtgtgtgtggctctggttttaaggcctaatggtccaga 183
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 336 ------atgtgtgtgtgtgtgtgtg------gctctggttttaaggcctaatggtccaga 383
Query: 184 gctaccttatctagtacaataaaatgaaaatcaaagttatattggtatctttataattgt 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctaccttatctagtagaataaaatgaaaatcaaagttatattggtatctttataattgt 443
Query: 244 tgtattctaattttgtccacaaattagttggctggaactttggtctcaatattaagt 300
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 tgtattctaattttgtccacaaattagttggctggaactttgggctcaatattaagt 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_d23.g1 MSMg01no139_d23.g1 CHROMAT_FILE:
MSMg01no139_d23.g1 PHD_FILE: MSMg01no139_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:35 2005
(653 letters)
>mm_chr12_41420061_41421113
Length = 1053
Score = 1170 bits (605), Expect = 0.0
Identities = 641/653 (98%), Gaps = 1/653 (0%)
Strand = Plus / Minus
Query: 1 tcccagcagctggccacattctgctctaaatatgttttttatattagatttgcccatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tcccagcagctggccacattctgctctaaatatgttttttatattagatttgcccatcaa 600
Query: 61 tttgcttcccagtgggatgaatgcttttcttttttgttaaggaggaaataccagttattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttgcttcccagtgggatgaatgcttttcttttttgttaaggaggaaataccagttattt 540
Query: 121 atagcaactaggggaaataaatgaacggttgcaggagccactggatagcatgtcaccacg 180
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 539 atagcaactaggggaaaaaaatgaatggttgcaggagccactggatagcatgtcaccacg 480
Query: 181 taaacagatctataaacagtcattttccataacagtcctgcaagatacgaaagatgactg 240
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 479 taaacagatctataaacagtcattttccacaacagtcctgcaagatgcgaaagatgactg 420
Query: 241 ggccaggtcattccacaaaaccttccaagctgcaatcccagccttccctgcaggaatgaa 300
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggccaggtcattttacaaaaccttccaagctgcaatcccagccttccctgcaggaatgaa 360
Query: 301 tttcaatcaagagatcagtaaatgggacagtgggcgatacagaatgtttggggtcttttc 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 359 tttcaatcaagagatcagtaaatgggacagtgggagatacagaatgtttggggtcttttc 300
Query: 361 taggcaggtctgctaggtcttagagccagccttggcgttgtcccttggagttgtaactta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 taggcaggtctgctaggtcttagagccagccttggcgttgtcccttggagttgtaactta 240
Query: 421 gggaaggctgaaatcatcagctctgaagaccctactgtgtaataaaaaaaaaattaaaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 239 gggaaggctgaaatcatcagctctgaagaccctactgtgtaataaaaaaaaa-ttaaaaa 181
Query: 481 gccatattaaaagattttatctttaaagaggtactgaaaatatctgtttggtgaagaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gccatattaaaagattttatctttaaagaggtactgaaaatatctgtttggtgaagaaat 121
Query: 541 caaatattacagctttattgttatatcttctgctcaccccctcatctcttccaccctcat 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 caaatattacagctttatttttatatcttctgctcaccccctcatctcttccaccctcat 61
Query: 601 cactacctcgtttaccattcagatgcgtagatcctcttcaacaccttttaaaa 653
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 60 caccacctcctttactattcagatgcgtagatcctcttcaacaccttttaaaa 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
