Query= MSMg01no139_l15.b1 MSMg01no139_l15.b1 CHROMAT_FILE:
MSMg01no139_l15.b1 PHD_FILE: MSMg01no139_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:13 2005
(641 letters)
>mm_chr12_10824447_10825487
Length = 1041
Score = 1135 bits (587), Expect = 0.0
Identities = 628/647 (97%), Gaps = 10/647 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgtgcaccttgcagcaggaaggtcaggtgtggaaggtttacatgaaattatct 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtgcaccttgaagcaggaaggtcaggtgtggaaggtttacatgaaattatct 263
Query: 64 aaatcagcactcttcatgcctaagaaactgatggtgtttttcatgcttcaggacgctggt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 aaatcagcactcttcatgcctaagaaactgatggtgtttttcatgcttcaggacgatggt 323
Query: 124 gattgctataacctcaatctagtgccttaggtcttggtcactgcttccgttaaacactat 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 gattgctataacctcaatctagtgccttaggtcttagtcactgcttccgttaaacactat 383
Query: 184 actctcaaccttaacctcaagcatagtcctctggctttcctttcttgccagaacataact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actctcaaccttaacctcaagcatagtcctctggctttcctttcttgccagaacataact 443
Query: 244 gaacagttctggactccttctatacatagtttcaaaatccacctaatagacaaaataaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaacagttctggactccttctatacatagtttcaaaatccacctaatagacaaaataaaa 503
Query: 304 ctgcttgtccttactgaagtgtagtgtacttcatctttgcccagaccaaaatgtcatcaa 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 ctgctggtccttactgaagtgtagtgtacttcatctttgcccagaccaaaatgccatcaa 563
Query: 364 acaaaggcagcttacctcccagctcaccctccacctccctggctactgccctggtgcagt 423
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 564 acaaaggcagcttacctcccagctcaccctccacctccttggctactgccctagtgcagt 623
Query: 424 ttctcaccattcatcattcacgtggctgtagctggggcagcctcattatcagtcaccatc 483
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctcaccatccatcattcacgtggctgtagctggggcagcctcattatcagtcaccatc 683
Query: 484 cccctcagctcagccatctggactctgctcgattaaacatcaggtaacccttcaaaaagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cccctcagctcagccatctggactctgctcgattaaacatcaggtaacccttcaaaaagg 743
Query: 544 gagatcttaccacctcactctgctccaaaaataaaaa------accattaaaaatacctg 597
||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 744 gagatcttaccacctcactctgctccaaaaataaaaataaaaaaacattaaaaatacctg 803
Query: 598 aagtatttctccaagacatacatagaaaaaa----caaaaaacaaaa 640
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 804 aagtatttctccaagacatacatagaaaaaaaaaacaaaaaacaaaa 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_l15.g1 MSMg01no139_l15.g1 CHROMAT_FILE:
MSMg01no139_l15.g1 PHD_FILE: MSMg01no139_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:13 2005
(595 letters)
>mm_chr12_10991133_10992127
Length = 995
Score = 1127 bits (583), Expect = 0.0
Identities = 592/595 (99%)
Strand = Plus / Minus
Query: 1 caaagacagttcccacaaactggtccagagtcactgaggagctcacgtgccacagagtcc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 795 caaagacagttcccacaaactggtccagagtcactgaggagctcacatgccacagagtcc 736
Query: 61 cataatagaatatgtctgttggcaatccttccagccacaaaattctgtgaacttttgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cataatagaatatgtctgttggcaatccttccagccacaaaattctgtgaacttttgtat 676
Query: 121 attacttcttgattttaactaaaaacactggacagtctaagttgaaagttatttgaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 attacttcttgattttaactaaaaacactggacagtctaagttgaaagttatttgaagca 616
Query: 181 atttgctgtcttgtgattctcatccaaaaaggagaattcctaaatattcaacaatactac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atttgctgtcttgtgattctcatccaaaaaggagaattcctaaatattcaacaatactac 556
Query: 241 cccccaaaacatatctgcttcatcaaggttatcctaatattaattatttataaggagaat 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccccccaaacatatctgcttcatcaaggttatcctaatattaattatttataaggagaat 496
Query: 301 gctgacaaattctaattgcaaataaatacaattgctgtcgattgcataatttatgattcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gctgacaaattctaattgcaaataaatacaattgctgtcgattgcataatttatgattcc 436
Query: 361 atttgttaaaccaagagaatacgagttgatgaaaggcattaagtggccccaaattaaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atttgttaaaccaagagaatacgagttgatgaaaggcattaagtggccccaaattaaagt 376
Query: 421 aaatttgggttcacagttttgtctacagtgttaatataacttgaagttctcagcttccta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaatttgggttcacagttttgtctacagtgttaatataacttgaagttctcagcttccta 316
Query: 481 agacttctgccatattggggatgtatgcaccaggtaaacagtgttcacacgggcctggta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agacttctgccatattggggatgtatgcaccaggtaaacagtgttcacacgggcctggta 256
Query: 541 tctggtcagcagtgcatcaatcagggatttctggagacaggttgtttagctcatg 595
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tctggccagcagtgcatcaatcagggatttctggagacaggttgtttagctcatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
