BAC Information

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BAC

Clone NameMSMg01-140I08
Chromosome12 (Build37)
Map Location 85,003,642 - 85,003,812
singlet/doubletsinglet
Overlap geneRbm25
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1, LOC626950
Downstream genePsen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140I08.T7 (MSMg01no140_i08.b1)MSMg01-140I08.TJ (MSMg01no140_i08.g1)
ACCAG345634AG345635
length709698
length of high quality
(start - end)
171 (84 - 254)109 (173 - 281)
definitionCHROMAT_FILE: MSMg01no140_i08.b1 PHD_FILE: MSMg01no140_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:16 2005CHROMAT_FILE: MSMg01no140_i08.g1 PHD_FILE: MSMg01no140_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGATCC
GCGGAATTCCATTATCATTGTCTCAGAAATTATATTTTCCCCCCTGTAAT
AGCTTTCAGTTTCTGGCTCTCCATGTCTCCTATCTTTCCTTTCTAATTTC
AATGTATTCAGTATTGGCTTTGCCTGTATGCTACCTTAGGTCAGCAGCTG
AATATATTGATGCCTTACACACTAGCTTTTCTTTCATAATCCTCTCTCAG
TTCTTTGGTCCGTGAGCAAGAAAAAAAGTATCTAACAGGTAAGACTGCTT
TTTACCGTTTTACATGCTCTACGTTACTGATATTAATACAAATGCCCCTT
TTATTGTTGCTGTTTCACATTTCACTGAACTTATACATTCACCTTTACAG
TTAACAATTGTGTTTTTGTTTTTGCTCCACCTGTTCGGTTTTTCGTCGCC
CTCTCTTTTTTCCCCACTGTTTTCCTTTTTCCCGAACTCTTTAGCATTTC
TTGGTTTCCCTTTAATGTTTACCATTTTCCCTTTTTACCATTTTCCTTTT
TCCCCTTTTACCTCTCCTCTTTTTTTTTCTACCCTTTTTTCTTTACTTAT
TTCTTTTCCCATTTCTTTTTCCGCCCTATTTTTTTCCCTTTTTTCCCTTC
TCTTTTCCCCGTTTTACCCCTTTTTCCTTTTTCTTTATTTCCCCTCTATT
ATTCCTCAT
TCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCGATGTTTCTCTGAAATTGAGCCTTACCCA
TTAGCCAAATGCATAATTCTCTGCTACTGTTAACATTACAGCCACACAGT
TCATGGTAAGCTGTTCTTTGTAAACATTTCCACAGATTTGACTTTTAATT
CTGACGCCATTTCTTCCTTTTCCAGCTACCTTTGGAAATGTAGCTTTCCC
GTCCTGCACGCTCCATTTAATTTCTTTAATTCTGGGTCTTAAGTGCTCTC
GCCTCTATCTAATGCATCATATTACCTCTCCCAGTATGAGCTTTTCCTTT
AGCGAATCCATCTCTCAGAACGTTTTTTGACTCTTGTTGTGTCTCACAAC
ACCTGTCTATACCTCGCGCGCACTCAATCGTCTTCTTCCTCTCCTCTCTT
CCATATCTACACTCCGCGTCGCTGTGCAGCCCTGACGTACACATCTCTCT
CTTTACGTGTTCATATCTTCTGCTCTCATTTCTCTCATCCTCTACTCTTT
CTCCTCTTCTCTCTTCCTTCTCCCTCTCTCTTCTACTTCACTTCTTCCTC
CTCAAACTCCATCACTACTTTCTTTCTTTCCTTCATCCTTCTCTTCTCAC
TCTCTTCTTCTCCTTCCTTTTCTCTACTTCTCACTCCTCTCTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_i08.b1 MSMg01no140_i08.b1 CHROMAT_FILE:
MSMg01no140_i08.b1 PHD_FILE: MSMg01no140_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:16 2005
         (171 letters)



>mm_chr12_85003442_85004012
          Length = 571

 Score =  331 bits (171), Expect = 2e-95
 Identities = 171/171 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttcccccctgtaatagctttcagtttctggctctccatgtctcctatctttcctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttcccccctgtaatagctttcagtttctggctctccatgtctcctatctttcctttc 260

                                                                       
Query: 61  taatttcaatgtattcagtattggctttgcctgtatgctaccttaggtcagcagctgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatttcaatgtattcagtattggctttgcctgtatgctaccttaggtcagcagctgaat 320

                                                              
Query: 121 atattgatgccttacacactagcttttctttcataatcctctctcagttct 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattgatgccttacacactagcttttctttcataatcctctctcagttct 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)