BAC Information

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BAC

Clone NameMSMg01-140L10
Chromosome12 (Build37)
Map Location 103,796,924 - 103,797,080
singlet/doubletsinglet
Overlap geneChga
Upstream gene4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5
Downstream geneItpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140L10.T7 (MSMg01no140_l10.b1)MSMg01-140L10.TJ (MSMg01no140_l10.g1)
ACCAG345777AG345778
length736743
length of high quality
(start - end)
158 (68 - 225)238 (72 - 309)
definitionCHROMAT_FILE: MSMg01no140_l10.b1 PHD_FILE: MSMg01no140_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:31 2005CHROMAT_FILE: MSMg01no140_l10.g1 PHD_FILE: MSMg01no140_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAGAGGAGCCGCGGA
ATTCATCCCATATCCAGAGAACGGCTACTGGTGTCAGCGAGACTCCAAAC
ACTGAGAGTACAGCACACAGAATCCTAGTACACAGGGCACCCAGTCTGCA
CCTTGCTGTTCCAGCTCCTTCATTCTGCCCAGGCTTCTAGTTAACTGCCA
TATGTCCCTCTGAGTGTCTACAAATCTCAGGGTCCCAGGAGCTGTCACCC
ATTCCTGCGTCTTTCCCAGACTCTAGCTCATATCATGTCACTGGTGCAAT
GACCACTGAATGTTATTTTTAACAGCTACCCTCCCACACCCTCGCCTCCC
AATTCCTCTTCCTGTCTCTGACTCCTACCTCTTTGTAGGGCCTTCTTTAT
ACTCTTGCCTGACCCTTATGCGCCTGGCTTTGTCTTTCTTCCTCTAACTT
ATTTCCCTTCACTCATTTTTTTTTTTGCTCTTCTTCTTGTTCTTTTTTTT
TTTGAGTTTTTTTTTTAACCTATATCTCCTCGAATTTATTATAATAATCT
TTTCCCTACTTCTTTATATAATCACACTTTCTTATTATTCCTCCTTCTCC
TTATTAATTCTCCTATTATCCCTTTCTATTTCACTCCCCCCCCCCTTTTA
ATTCCTACATCCATTTTCTTCTTCTCACTAACTACCTCTTTTTATCTCTC
CTCTCCTTCTTCTTTCTTTTCTTTCCTTCACTCCCT
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAATGAGGAAAAACAAGGTAGCTTGGTAT
GGTTGAATACACCTATAAATCCCAATGCCTGGGAGACTGAGACAGGGGCA
TTGCCTTCAGTTCAAGGCCAGCCTGGGCTATATAATGAAACCCTGTCTCA
AAAAATAAAAAAAAAATAAAATAAGATAAAATAAAGAGAGAAGGGAGGGA
AGAGAAAAGAACGGAAAAGAAGGGAGGGAGGGAAAAGAGAGGGAGGAAAA
GAGAGAGGGAAGGCCTTTTTCTACCTACCCCCCCCCTACTCATACCCCCC
CATTATTTATTTTTTTTTTCCCCCCCAATTTATCCCCACTCACTCTTTTT
TCTCCCCCTCTCACCCAATTAATCTAATTTATTTTTATTCCTCCTCCACT
CTTTTATATCTCCTCCCCTCCCTCCCTCCCCCAATAATCCCACACTTCAC
CTTCTAATCAATATTAATTTTAATAACATTAATAAAACCTAACTCCTCAA
CCCATCACTTTCAATATTAATCAATCTTATTATTTTATTTCTCACTAAAC
TACCTATATTAATACATTATTTTACTCCAATCCATTCTTTTCACAACTTT
TCCTTTCTATTCTTTAACCTCTATTTATATCATTATTACATCACTTCTTA
CATCAATTCCCTTCCTGTACTAAAAACCATCTCACAATATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_l10.b1 MSMg01no140_l10.b1 CHROMAT_FILE:
MSMg01no140_l10.b1 PHD_FILE: MSMg01no140_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:31 2005
         (158 letters)



>mm_chr12_103796724_103797281
          Length = 558

 Score =  281 bits (145), Expect = 2e-80
 Identities = 154/157 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacggctactggtgtcagcgagactccaaacactgagagtacagcacacagaatccta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 357 agaacggctactggtgtcagcgagactccaaacactgagagtacagaacacagaacccta 298

                                                                       
Query: 61  gtacacagggcacccagtctgcaccttgctgttccagctccttcattctgcccaggcttc 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtacgcagggcacccagtctgcaccttgctgttccagctccttcattctgcccaggcttc 238

                                                
Query: 121 tagttaactgccatatgtccctctgagtgtctacaaa 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tagttaactgccatatgtccctctgagtgtctacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)