BAC Information

Click to search

BAC

Clone NameMSMg01-141A19
Chromosome12 (Build37)
Map Location 64,954,451 - 64,955,123
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665741, EG382606
Downstream geneLOC435302, EG623046, LOC623123, LOC217645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141A19.T7 (MSMg01no141_a19.b1)MSMg01-141A19.TJ (MSMg01no141_a19.g1)
ACCAG346025AG346026
length1,1061,253
length of high quality
(start - end)		774 (90 - 863)690 (94 - 783)
definitionCHROMAT_FILE: MSMg01no141_a19.b1 PHD_FILE: MSMg01no141_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:01 2005CHROMAT_FILE: MSMg01no141_a19.g1 PHD_FILE: MSMg01no141_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCAGTCTTNNNNNGGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACGTGAGGAATACCACCTTTTTGAGAAGCACCTG
AATAAATGTCCAGCATCCTTACCCCTCAGGGAATTGCAAATCAAAAAAAC
CCTGAGATTCCACCTCACACCAGTCTTAATGGCTAAGATCAAAACTTCAG
GTGACAGCAGATGTTGGAGAGGATGTGGAGAAAGAAGAAAGCTCATCAAT
TTTTGGTGGAATTGCAAACTTGTACAACCACACTGGAAATCAGTCTGGCA
GTTACTCAGAAAATTGGACATAGTACTACTGGAGGATCCCGCATTTCCTC
TTCTGGGCATATATCCAGAAGATGTTCCAAGCGGTAAGAAGGACATGTGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAAAAGCTGGAATGA
ATCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGTAACCCA
ATCACAAGAGAACTCACATGATAAGTACTCACTGATAAGTGGATATTAGC
CCAGAAACTTAGAATACCCAAGATATAAGATACAATTTTTGAAACACATG
AAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAG
AATTGAGAACAAATTACCCATGGAAGGACTTACAGAGACAACATTTGGAG
ATGAGACAAAAGGATGGACCATCTAGACACTGCCATATCCAGGGATCCAT
CCCATAATCAGCCTCCCAATGCTGACACCACTGCATACACTAACAAGATT
TTGTTGAAAGGATCCAGATATAGCTATCTCTTGGGAGACAATGCCCGGGC
CTAGGAAACACCAAAAATGGATTCCTTCCCGCCCAGGGATTGAAATGGGT
TCCCAGGGCCCCCCCTTTTTGGGGAGTTTTAGAAAAAAACCCCCCGGAAA
CTTAAAGGGAATTTGGCGGCCCCTATAAGGGGGGAAAAAAAATGTTAACT
TAACCC

NCCCCTTTTTTTTNNNAAGATGCGAGNCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAATGGTACTGTAAA
CCTAGCTAACTACCAGTGGCTACCTTGTCACTGACTCTGGACGAGAGCAT
ACAAATGCCTTTTTTCTGAAACAGTAATTTATTATCTTAATGATAACTTG
TTTGATATGATGAAATATAAAGCCAGTACAGTTTTAATTTGCATTTCCAT
AATGGCTAATAATTAAATTTTAATATGCTTATTAGACACGTCTATCAGAT
ATATATTAATAAGCACATAAAAGAAGATGACATATTGTTTTCATCTTTTG
GGAATTATTTGTTTATTTCATTAGCCAATTTATGGGATTTTGTGGAGTTT
AGGGACTGTCTTTTGTTTGTTTATCTTTAATTCTTTATTCTAAATGTTAA
TTTTCTCTCAGGCGTGAGATGGAAAATGGAAAATGGAAAATTTTCCCTAC
TCTATAGGTTGAAGTTTTACTTCTAATGCAGAAAAGGAGCTCTTTAATTG
CATGGAACTTCATTTGTGAATTCTTGGCATTTTTTTTTTCTGAGCTGCTG
GAATTCTTTTGAGATCCTGTATATATTCCTGTATCTTGAAGTACTTTCAT
GTTGTTTTCCTGTAAGTAATTCAGTGCTTTCCAACCTTACATTATTTTTT
TAATTCATTTTTTGTACAGGATGAAGGATAAATATCTAGTTTCATATTAT
ATATATATATATTCAGTTTTCCTGGAATCACTTGTTGAAGAGGGTATCTT
TTCTCCCATGTATGTTGCTCTAGTTTCTTTCTGTTACTGTAATANAACAC
CTTGACCAGAAACAACCAAGAGGATGAATGCCATTGTATAGTTTTATACA
TTCCGACCACAGTCCATCCCTGAAGTCCAAGGCAGAAATTTTCGGGCCAG
GGGCATGGGTTGCTCCGGAAATGAAACCTCCCAAAAATTTGTTTGGGCTT
TATTCCCCCCCCCCGGAAAAGAAACTTCCTAAGAACCTCTTTCTTGTGTG
GGAAAAATAATTTTTTCCTATAGTTAAAAAAATAACGTCCGCTTCCTTTC
TATTATCCCTTTTTCCTGGTACTTTTTATTTTACTCATTATTCAGTTCCT
TCTCTTATTCTCTTATAAATACATTCTTTCCACTTCCCAATTTTTTTCCT
CTTTAATATTTCTTCTATTATAGCCTTGCCTCTCTCACTCTGTTGCTCTT
AGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_a19.g1 MSMg01no141_a19.g1 CHROMAT_FILE:
MSMg01no141_a19.g1 PHD_FILE: MSMg01no141_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:01 2005
         (690 letters)



>mm_chr12_64954322_64955412
          Length = 1091

 Score = 1147 bits (593), Expect = 0.0
 Identities = 650/675 (96%), Gaps = 13/675 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtaaacctagctaactaccagtggctaccttgtcactgactctggacgagagcataca 60
           |||||||||||||||||||||||||||||   |||||||||| ||||| |||||||||||
Sbjct: 802 ctgtaaacctagctaactaccagtggctaaaatgtcactgaccctggaggagagcataca 743

                                                                       
Query: 61  aatgccttttttctgaaacagtaatttattatcttaatgataacttgtttgatatgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aatgccttttttctgaaacagtaatttattatcttaatgataacttgtttgatatgatga 683

                                                                       
Query: 121 aatataaagccagtacagttttaatttgcatttccataatggctaataattaaattttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aatataaagccagtacagttttaatttgcatttccataatggctaataattaaattttaa 623

                                                                       
Query: 181 tatgcttattagacacgtctatcagatatatattaataagcacataaaagaagatgacat 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 622 tatgcttattagacatgtctatcagatatatattaataagcacataaaagaagataacat 563

                                                                       
Query: 241 attgttttcatcttttgggaattatttgtttatttcattagccaatttatgggattttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 562 attgttttcatcttttgggaattatttgtttatttcattagccaatttatgggatgttgt 503

                                                                       
Query: 301 ggagtttagggactgtcttttgtttgtttatctttaattctttattctaaatgttaa-tt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 502 ggagtttagggactgtcttttgtttgtttatctttaattctttattctaaatgttaattt 443

                                                                       
Query: 360 ttctctcaggcgtgagatggaaaatggaaaatggaaaattttccctactctataggttga 419
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 ttttctcaggcgtgagatggaaaatggaaaatggaaaattttccctactatataggttga 383

                                                                       
Query: 420 agttttacttctaatgcagaaaaggagctctttaattgcatggaacttcatttgtgaatt 479
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 382 agttttacttctaatgcagaaaaggagctctttaattgcatgaaacttcatttgtgaatt 323

                                                                       
Query: 480 cttggcattttttttttctgagctgctggaattcttttgagatcctgtatatattcctgt 539
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttggca--ttttttttctgagctgctggaattcttttgagatcctgtatatattcctgt 265

                                                                       
Query: 540 atcttgaagtactttcatgttgttttcctgtaagtaattcagtgctttccaaccttacat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcttgaagtactttcatgttgttttcctgtaagtaattcagtgctttccaaccttacat 205

                                                                       
Query: 600 t-att---------tttttaattcattttttgtacaggatgaaggataaatatctagttt 649
           | |||         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 taattttttttaaatttttaattcattttttgtacaggatgaaggataaatatctagttt 145

                          
Query: 650 catattatatatata 664
           ||||||||| |||||
Sbjct: 144 catattatacatata 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space:   735080
Effective search space used:   735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |