BAC Information

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BAC

Clone NameMSMg01-141K11
Chromosome12 (Build37)
Map Location 74,851,314 - 75,012,852
singlet/doubletdoublet
Overlap genePrkch, EG666385, LOC100041489, Hif1a
Upstream gene5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik
Downstream geneEG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971, Kcnh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141K11.T7 (MSMg01no141_k11.b1)MSMg01-141K11.TJ (MSMg01no141_k11.g1)
ACCAG346472AG346473
length1,1581,253
length of high quality
(start - end)		279 (124 - 402)577 (123 - 699)
definitionCHROMAT_FILE: MSMg01no141_k11.b1 PHD_FILE: MSMg01no141_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:18 2005CHROMAT_FILE: MSMg01no141_k11.g1 PHD_FILE: MSMg01no141_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,851,314 - 74,851,590)(75,012,276 - 75,012,852)
sequence
CCGTTTGTTNTNNNACACTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCATTTCTGTTTAAAGAACGATAAAAGACCGGANTCANAGAG
GTGTCATTTTCATACGCTCTTATCCCGTGCAGNTGCCAGAAAGAGGTCGG
AAGGGGCAGGAGGAAGAGAACCAGGGCTGGTGTGAGTGTCTATTGTCATC
CACTAGAGAAGGAGCTGTGTGCTCATGGTGATGCTTGTCCAGGTCTCAGG
TTCTCGCTCTCAGGAGACGTTCCCATAGACAGAGGCTAAAAACACCAGGA
TGAGCATGGGACCTTGTGAATAGGACTGTAGATCCTGGGGGGCCTCAGTC
ATGACATTGTATTTGGTTCAGGCTGCAGGACACATTGTGGAGTTATTGAA
TGTTTTTTTCCAATGAGGTTGTGTACTGTGGGCACCAGGCAATGCCGCTG
CTAAAAGAATGAGTGTATGATAAGAGGTTTGGAATTCCATGAACCACAAA
ACTTCATGTCCTCTAAAGAAATAACAGTTTTCTTAATATTCCTTTGCAGT
CTTTTCCCAGAGAGGCCTTTAACATCCCTGATGGTAGTTGTATTTCCTTT
ACTCCTGTACTAGAAACACAGAGCTCAATAGCTCAGATGGTAGAGAAGAT
TATGATGGACAGGATGTGCTGTGTCTGTTACCCGAGCTTTGTTAGATGCT
TATATTAACGGAATACTCACTTTTCTTGTATTGTATTGAATATTTCTTAA
TTCTTTTCTCTCTCTATTGTTTTTTGTTTTTTCAGTACCCTATCATTCTT
CCCTTTGACGTTTTTTCTCCTTTTTCTTATTTATTAAATTGCTTGTATAT
TTTTATTTTTATTTTTTTGTTTTCTTTTCTTTACTTTCTGTTCTTTTAAA
TTTTTTTCTTTTTCTTTTATATTTTTTCCTCATGATTCATTTTTTATTTT
CCTCCTTTACTTTTTTTTACTATCTTTTCTTTTCTTTATTTTATTTCTTT
TATATTTTTTTATTTTCCTTTTTCTTTTTTATTTTTTTACTCTTTTTCTT
TTTGCTTTTTCACTTTTTCCATTTGTTATTTCTTTTTTTTATTATTTTAC
TCATTCTTTCTTTTCATTTCTCTTTTTTCTTTCTTACTTCTCTGCTTCTC
ATTATTTC

CCTCCTTTTTATAACATGGAGNCTGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCTTTATGTTACATTTGTCTAAAAGAC
TATGCTTGGNAAACCCATGAGTCTTTTAATTTTCACCGGAGAAACCATGA
ACTTTAATATCAAATTCAATACACACAACAAGTAGTTCATTCTTGAAACT
TCAAGAGATGGAAACAAAATTGCTATAATTAAAATTTTATGATTAAACAT
TCTCACTATACTTTTACCAAAAATGCTGAGCAATGACACTTTGGCTTGTT
AAATTCTTTTTCAAATCCTTCAGAGTCAAGCAGAAAACATGCAATAAATA
CCTATACTACAAGCAAGAAATGGCTAGGTAAAACCTACCTATTGCTGTCT
AGTCCCATTGGTAGGGGTACTGAAACAAAGTAACCTTTTTCTTGTAAGTT
AAAATCAGTTTCTTGGTAGGAAGGTACTTCAACTCCACAGATATATTTAG
GTTACTTTCTCTTAATGAGGAGACAGACTTTAAAAAAAAAAAGTCATGAG
TGTTTTAGATATCCATTTTTAACCTAAATCTGTAATATTCATGAATGAAA
AAATTATCATACAACCAACATCATAAACTGTTTTAAATTCTTGACAACAA
CAAAAGTCAAGAGACTAATCTGCCTTAGCCTCCTATATACCATCCTTGGC
ATACAAAACACTGGAATGTAAGAACAGTATCTAAACCTTGAGCCTGCACA
TCATCAGAAAGTTGGTACAATCTCTAGATTTTCCAAGGTGCTTTTGGAGT
GCACTGTAACTTGTTAAAATATTCTGACAACTAAATAATACTAAATTAGA
AAGTGTACTAATTCCCCTATTGCTTATTAATTCCTGCCAAACATACTTCT
AATTGGTAGTCTCTGAACTTGTATTATATCATACTATTTTCTTACATTTT
CTAACCCTACACTTCCTTAACTCCTGGTTCTCCCATGCTTGATAAGCATA
TATTTTTTACTCAATGTCCAAAATAAACTTCTAATTGTCTCTTTTTCGTT
TAAAAAAATTTGGTTCATCTAAATATAAATATCATTGCCTTAATTTTATT
TTATTTTATCTCTTAAATACTTTCTACTAATTATATTTTGTTTTTTTATT
TAAAATCTTTTATTCTGATATCTATTCTTTCTTTCCATTATTCTTTTTTA
ATTTGCCCTTTCCCTTTTTTCTATTTTATTCTTATAACTCTATCTTCATA
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_k11.b1 MSMg01no141_k11.b1 CHROMAT_FILE:
MSMg01no141_k11.b1 PHD_FILE: MSMg01no141_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:18 2005
         (279 letters)



>mm_chr12_74851114_74851792
          Length = 679

 Score =  507 bits (262), Expect = e-148
 Identities = 273/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccgtgcagntgccagaaagaggtcggaaggggcaggaggaagagaaccagggctggtgt 60
           ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccgtgcagctgttagaaagaggtcggaaggggcaggaggaagagaaccagggctggtgt 260

                                                                       
Query: 61  gagtgtctattgtcatccactagagaaggagctgtgtgctcatggtgatgcttgtccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgtctattgtcatccactagagaaggagctgtgtgctcatggtgatgcttgtccagg 320

                                                                       
Query: 121 tctcaggttctcgctctcaggagacgttcccatagacagaggctaaaaacaccaggatga 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tctcaggttctcgctctcaggagacgttcccatagacggaggctaaaaacaccaggatga 380

                                                                       
Query: 181 gcatgggaccttgtgaataggactgtagatcctggggggcctcagtcatgacattgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatgggaccttgtgaataggactgtagatcctggggggcctcagtcatgacattgtatt 440

                                                
Query: 241 tggttcaggctgcaggacacattgtggagttattgaa 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttcaggctgcaggacacattgtggagttattgaa 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no141_k11.g1 MSMg01no141_k11.g1 CHROMAT_FILE:
MSMg01no141_k11.g1 PHD_FILE: MSMg01no141_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:18 2005
         (577 letters)



>mm_chr12_75012076_75013052
          Length = 977

 Score = 1054 bits (545), Expect = 0.0
 Identities = 569/577 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttaattttcaccggagaaaccatgaactttaatatcaaattcaatacacacaacaag 60
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 cttttaatttttattggagaaaccatgaactttaatatcaaattcaatacacacaacaag 718

                                                                       
Query: 61  tagttcattcttgaaacttcaagagatggaaacaaaattgctataattaaaattttatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tagttcattcttgaaacttcaagagatggaaacaaaattgctataattaaaattttatga 658

                                                                       
Query: 121 ttaaacattctcactatacttttaccaaaaatgctgagcaatgacactttggcttgttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttaaacattctcactatacttttaccaaaaatgctgagcaatgacactttggcttgttaa 598

                                                                       
Query: 181 attctttttcaaatccttcagagtcaagcagaaaacatgcaataaatacctatactacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 attctttttcaaatccttcagagtcaagcagaaaacatgcaataaatacctatactacaa 538

                                                                       
Query: 241 gcaagaaatggctaggtaaaacctacctattgctgtctagtcccattggtaggggtactg 300
           |||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||
Sbjct: 537 gcaagaaatggctaggtaaaacctacctattgctgtctagtcccaaagggaggggtactg 478

                                                                       
Query: 301 aaacaaagtaacctttttcttgtaagttaaaatcagtttcttggtaggaaggtacttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaacaaagtaacctttttcttgtaagttaaaatcagtttcttggtaggaaggtacttcaa 418

                                                                       
Query: 361 ctccacagatatatttaggttactttctcttaatgaggagacagactttaaaaaaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 417 ctccacagatatatttaggttactttctcttaatgaggagacagactttaaaaaaaaaat 358

                                                                       
Query: 421 gtcatgagtgttttagatatccatttttaacctaaatctgtaatattcatgaatgaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 357 gtcatgagtgttttagatatccatttttaacctaaatctgtaatattcatgaatggaaaa 298

                                                                       
Query: 481 attatcatacaaccaacatcataaactgttttaaattcttgacaacaacaaaagtcaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 attatcatacaaccaacatcataaactgttttaaattcttgacaacaacaaaagtcaaga 238

                                                
Query: 541 gactaatctgccttagcctcctatataccatccttgg 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gactaatctgccttagcctcctatataccatccttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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