Query= MSMg01no142_c03.b1 MSMg01no142_c03.b1 CHROMAT_FILE:
MSMg01no142_c03.b1 PHD_FILE: MSMg01no142_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:24 2005
(780 letters)
>mm_chr12_16763714_16764892
Length = 1179
Score = 1431 bits (740), Expect = 0.0
Identities = 772/786 (98%), Gaps = 7/786 (0%)
Strand = Plus / Plus
Query: 1 atcattcaatccatttgaatcaataagccccttatttacctttcatttatatagaactca 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 195 atcattcaatccatttgaatcaataagcaaattatttacctttcatttatatagaactca 254
Query: 61 atcaactgtcatcctgtgggctaggtgccaggatcaaagagcagagagagctgtccttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atcaactgtcatcctgtgggctaggtgccaggatcaaagagcagagagagctgtccttcc 314
Query: 121 ttctagaaacgtagccaactgaaagacattaacaaacagaaacagagacttaaacatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttctagaaacgtagccaactgaaagacattaacaaacagaaacagagacttaaacatctg 374
Query: 181 gtctgacaatgaatctccaccttcgcacccaccataagtgacccttcctgaaatcattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtctgacaatgaatctccaccttcgcacccaccataagtgacccttcctgaaatcattca 434
Query: 241 aaagctatctagttttaggacccatggggtagctcagggaataaggctgattgctgccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaagctatctagttttaggacccatggggtagctcagggaataaggctgattgctgccag 494
Query: 301 gcctgatgctctgaattcaatcctcagtgacccgcctggtaggagagaaccaattcctac 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 495 gcctgatgctctgaattcaatccccagtgacccgcctggtaggagagaaccaattcctac 554
Query: 361 aagttgtctgctgactttcatatggctgctctggcctgtgtgcacacccctccaacacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagttgtctgctgactttcatatggctgctctggcctgtgtgcacacccctccaacacac 614
Query: 421 acagagacacagacacagacacagacaca------cacacacacacacacacacacacac 474
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 615 acagagacacagacacagacacagacacagacacacacacacacacacacacacacacac 674
Query: 475 acacacacacacgcgcgcgcgctaataaattacaataaaacaagttctttttgagacaca 534
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 675 acacacacacacacgcgcgcgctaataaattacaataaaacaaattctttttgagacaca 734
Query: 535 gtctcactcggtagcccggactggaactcatgatgtagatcttacaaaggcatgggccac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtctcactcggtagcccggactggaactcatgatgtagatcttacaaaggcatgggccac 794
Query: 595 ttccttttctccttctttcccagtgaaaggcatgcattgcaaataagctcttccaaaaac 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttccttttctccttctttcccagtgaaaggcatgcattgcaaataagctcttccaaaaac 854
Query: 655 tcttttttcctgtgaggctggagctcaggggccaagcatttgcatagatctattttattc 714
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tctttgt-cctgtgaggctggagctcaggggccaagcatttgcatagatctattttattc 913
Query: 715 ccaggcactttgattggcatgggatggacacatgtacattctcctgcagattcatccatg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ccaggcactttgattggcatgggatggacacatgtacattctcctgcagattcatccatg 973
Query: 775 ttaggg 780
||||||
Sbjct: 974 ttaggg 979
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 780
Length of database: 1179
Length adjustment: 10
Effective length of query: 770
Effective length of database: 1169
Effective search space: 900130
Effective search space used: 900130
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_c03.g1 MSMg01no142_c03.g1 CHROMAT_FILE:
MSMg01no142_c03.g1 PHD_FILE: MSMg01no142_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:24 2005
(686 letters)
>mm_chr12_16857128_16858213
Length = 1086
Score = 1319 bits (682), Expect = 0.0
Identities = 685/686 (99%)
Strand = Plus / Minus
Query: 1 tgctccctgtggctcactgctgcctcctcctcctgaatcagacatcacatttgctcccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tgctccctgtggctcactgctgcctcctcctcctgaatcagacatcacatttgctcccac 827
Query: 61 aaggggcctcctggactctgggtctgagatctgattacagtttccctgcaaggaactctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 aaggggcctcctggactctgggtctgagatctgattacagtttccctgcaaggaactctc 767
Query: 121 tggcccattgacaggtcaaggcgtttgcacaccagaatgtgggctagtctccgggacaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tggcccattgacaggtcaaggcgtttgcacaccagaatgtgggctagtctccgggacaag 707
Query: 181 attgagcaatgacccccatggaacctgttaacagctggccctattgatgtcattgctaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 attgagcaatgacccccatggaacctgttaacagctggccctattgatgtcattgctaag 647
Query: 241 gaatctcaggtcacgtggcccagggcatcgtgtcatgacctctgagaaacagagtgaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gaatctcaggtcacgtggcccagggcatcgtgtcatgacctctgagaaacagagtgaagg 587
Query: 301 ggggagggggggacagctccctagggaataatactgtgaaggatcaagggatcagaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggggagggggggacagctccctagggaataatactgtgaaggatcaagggatcagaaaaa 527
Query: 361 gacaagctggtgtgacacctgccaagggtggaaggcagagagcagaaatgggtgtggcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gacaagctggtgtgacacctgccaagggtggaaggcagagagcagaaatgggtgtggcag 467
Query: 421 ctccctgttgccaggagggttctgtgaagtgactcatggtcagcccagaaggcagttgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctccctgttgccaggagggttctgtgaagtgactcatggtcagcccagaaggcagttgta 407
Query: 481 gagcacagattccctgtctgaacagtcctgaaggctcagaaatgtcacttgggctcagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagcacagattccctgtctgaacagtcctgaaggctcagaaatgtcacttgggctcagtc 347
Query: 541 actgcaggcttgggacgttgctgcaaggaaccacagagtgctcagtctgtctcacgactg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 actgcaggcttgggacgttgctgcaaggaaccacagagtgctcagtctgtctcacgactg 287
Query: 601 tgttccttgtgacagaacagcaagctctttcctgaagggagagctgaacagcgcagtcca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgttccttgtgacagaacagcaagctctttcctgaagggagagctgaacagcgcagtcca 227
Query: 661 caaaggtggcatgtgcttggtgagtg 686
||||||||||||| ||||||||||||
Sbjct: 226 caaaggtggcatgggcttggtgagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
