Query= MSMg01no142_d13.b1 MSMg01no142_d13.b1 CHROMAT_FILE:
MSMg01no142_d13.b1 PHD_FILE: MSMg01no142_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:37 2005
(664 letters)
>mm_chr12_56385919_56386982
Length = 1064
Score = 1185 bits (613), Expect = 0.0
Identities = 652/670 (97%), Gaps = 11/670 (1%)
Strand = Plus / Plus
Query: 1 aaactatcattctcttccattatactaaaaaactgtcaagacagcgattaagctatttta 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactatcattttcttccattatactaaaaaactgtcaagacagcgattaagctatttta 260
Query: 61 tgccgccattaaatttatgtcttcatttcagtgttgtttctttgaagaatctattttctt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgccattaaatttatgtcttcatttcagtgttgtttctttgaagaatctattttctt 320
Query: 121 tagaatgaacagcagtctatttaaattgctattcagaacccactcatccatgtctgtggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaatgaacagcagtctatttaaattgctattcagaacccactcatccatgtctgtggt 380
Query: 181 tccatttctgtgcatcacatcaactgtgagctgaaaatatttgggaaaaaaatgttaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatttctgtgcatcacatcaactgtgagctgaaaatatttgggaaaaaaatgttaatt 440
Query: 241 ttcacccatcatagacttttctttcctgtcagtacttaaactttt----cagtaggatta 296
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ttcacccatcatagacttttctttcctgtcagtacttaaac----accacagtaggatta 496
Query: 297 cacagcatttatactgtattagagatgacacgtagcctaaggatgcaggtacactggagc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cacagcatttatactgtattagagatgacacgtagcctaaggatgcaggtacactggagc 556
Query: 357 caatatacggatcctgatcccgaaatggatttctggaaccagtctacagaatcaggtctg 416
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 557 caatatatggatcctgatcccgaaatggatt-ctggaaccagtctacagaatcaggtctg 615
Query: 417 agcttggtggcacatgcctgtaacccagcaactgggaagccgagcaatacaatctgagtt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agcttggtggcacatgcctgtaacccagcaactgggaagccgagcaatacaatctgagtt 675
Query: 477 gaaaccagcatgggcctgcaagattatttctccaaaataaaagaaaaaaagaaatcaaga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaaaccagcatgggcctgcaagattatttctccaaaataaaagaaaaaaagaaatcaaga 735
Query: 537 gactttcaatagaatgaggaggtggtttagctggtaaagtgcttgccctcacaagcacga 596
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 736 gactttcaatagaatgaggaggtggtttagctggtaaagtgcttgctctcacaagcacga 795
Query: 597 ggacctgagttcanatccagtcccatgtgaaagtgtccatgatggtgt--tgcccttgac 654
||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 796 ggacctgagttcaaatccagtcccatgtgaaagtgtccatgatggtggcgtgcgcttgac 855
Query: 655 ctgctgagat 664
||||||||||
Sbjct: 856 ctgctgagat 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_d13.g1 MSMg01no142_d13.g1 CHROMAT_FILE:
MSMg01no142_d13.g1 PHD_FILE: MSMg01no142_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:37 2005
(269 letters)
>mm_chr12_56511586_56512254
Length = 669
Score = 449 bits (232), Expect = e-130
Identities = 238/240 (99%)
Strand = Plus / Minus
Query: 1 tgtcagcatacctgtaagctagcacctgggagcctgaggctagggggtcacaaacctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgtcagcatacctgtaagctagcacctgggagcctgaggctagggggtcacaaacctgag 245
Query: 61 ggaagcttgagtaaattaaggggggatgagcatgaaatcagacactggagaggtggctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggaagcttgagtaaattaaggggggatgagcatgaaatcagacactggagaggtggctca 185
Query: 121 gtacttaaagaaaactggttgttcttccagaggactggggttctacaaagagagtagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtacttaaagaaaactggttgttcttccagaggactggggttctacaaagagagtagcta 125
Query: 181 gggctacacagagaaaccctgttttgtgtgtgtgtgtttgtgtgtatgtgtgtgtgtgtg 240
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 124 gggctacacagagaaaccctgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
