BAC Information

Click to search

BAC

Clone NameMSMg01-142M19
Chromosome12 (Build37)
Map Location 66,786,946 - 66,787,485
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142M19.T7 (MSMg01no142_m19.b1)MSMg01-142M19.TJ (MSMg01no142_m19.g1)
ACCAG347315AG347316
length1,2311,205
length of high quality
(start - end)
579 (121 - 699)59 (341 - 399)
definitionCHROMAT_FILE: MSMg01no142_m19.b1 PHD_FILE: MSMg01no142_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:56 2005CHROMAT_FILE: MSMg01no142_m19.g1 PHD_FILE: MSMg01no142_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATATTNNNNNNCTCAATGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCATACTACTATTAACTACCCTATAAATATGAAGTGGGTAGGT
CACAGGCCCTTGGGACACCTCATTTAGCTGAGTGCCCGAAGGATTAAACT
GTCCCATAATTACTTATCCTAATTGTCATGGACCAAAGCAGCTCTAAATG
CTCATTGGAGAAGCACATTGTTTTTTCAGTAGGTAGCAGTGAATACTAAG
ACTCACAACTGGTCAAAATGCAGTGACTGCATTGTATTAAATGGGGGATT
TATATCAGACCCTTCCCAGAAGGCTCAGGGATCATCTCAGAAGTGGGAGC
AGAACAGCGTTAGCAGACAGAGGTAGTAGAATACTGTAGTGAGATAGGGT
TTTCTGTATTTGAAAACACAGAATAACAGAGACACTGCATTCATAAAGTC
TATGCTGAAGACCTTTACAAGATCAAAGTATACTTCACATGCAAAACCCT
GAGCAGCTTTTCACATTCTGGTGAATGGCCCTATACCTATGTCCATACTG
GGAGCCCTGAGAGAACTTAGTGAGTTAAAAAAAAATAGTACAATGACAGG
AGTCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGAGCCTGACAAATAC
AGATGCAGATGCTCACAACCAACCATTGGACTGAGCACAGGAACCCCCAA
TGGATCAGTTATGGAAAGGAATGAAGGAGCTGAATGGTTTTTCCACCCCA
TAGGAAGAACAACATTATCAACTAACCAGACTCTTTCTAGTTCTCAGGGA
CTAATCCATCAAACCATAAAATACTCTTGGAGGGAACCATGTCTCCCGTC
TCATATGTTACATAAGATCTCCTTGTTGTGTATCCACGGTAATAAAAGTT
CCTTGCTCCTGTTTATTTCCTAATTCCCCTTAGTTTTGTATTTCCTTTTT
CTTTATTATTCTTTCTCTTTCTTCTTATTTCTCTTTTTTCTTTTCTTATT
TCTTCTTTCCTTTTTTTTTCTCTTTTCTTTTCTGTCTTTTTTTTTTTTAT
TTTTCTTTCTTTTTTTCTTTTTCTTTCTTTTTTTTCTTTTTTTTTTCTTT
CTCTTTTCTTCTTTTTTCTTTCTCTTTTGTTTTTTTTTTTTTTTTTTTTT
TTCTTTATCTTTCTTTCCTTTTCTTTTTTCTTTTTTATTTTTTTCTTTCT
TTTTTTTCTATCTTTCTTATTCTTTTTATTT
CCGTCTTTANTAAACGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGCCATTAGGGCCCTCNNNNNNGANNNCCAG
AGAGNNNANNCCCCTTAAAACCCCTCACACNCANAGAGNCNGAGAGAAAG
AAGGAGCTGAGAGCTGAGGAGNAGANGGACAACGGGCANACNANGGANCC
NNCCANANNNNNNGAACAAAACAANNAANAAGGGNAGCTCAGAAGGAAAA
GGAGACCAGGCCNCNAAAAGAAAAGACAGGNCNACGGGGACNAGCCACCA
CANCNAGGCANCNGGANGGGNNANAGNNNTCTGTATTGGNCTCTGTCTTT
TGAAAAAAAAAAGTGTCTTCTGGATGAGTAGTTAGGAATTATCTGGGGGT
ATTTTTTTTAATGNNNAGAANGCAGNNAGGGANGGNGNNGNNACAGAACC
CCCCCAGNNGNAGGCCCCCCCGACNNCACNAGGNCCAGAGGGAAGGAAAG
GCNCCCAGNACCAGGCANCGNNNCCCNAAGGGNGAGGGNCNNAAGNCCAA
CGGAAGAGCGGNGGGNNACGGCNAAGGCAGGNGCNCNACNANGGCACCNN
AAGGGNNANAGCACCAGGCAGNCANNCAGGNGANNCAAAGGCNNCAGGNC
AGAAGGAGGCNGCCAACCCAAGAAAGANAGCAAGAAACCAAACAAAAAAG
AAAAAGCAAGNAAACAAGGAAAAAGGAAAAGAAAACAANACCAAACCAGA
AGGAAACAGAGAACAGGAGGAAGAAAGGAAAATAAAANACAAAAAAGGGA
AAAAGGAAAAAAAAAGAGGAAGGAAAAAGAGGGGAAAGAGGAAAGGGAAA
AGAGAAAAAAAGAGAAAAGAAGAGAAAAGAAGAGGAGAAGAAAGAGAAAG
AANAAGAAGAGAAGGAAGGAAGAGAAGGAGAAAAGAAAAAACAGAAGAAA
AGAAAGAGAAAAAAAGACAAAAAGAGAAAGGAAACAGAGANAAAAAGAAA
AGGAAAAAACAAAAAAAAAAGAAGACAGAAACAGGCGAAACACAACAGCA
GAGAAAGAAAAAAAGAGAGACAAAGAAAAGAGCGAAACAAGACAAGAAAA
AAGGAGAAAGAACAAAAAAAAAGAAAGCGGACGACGGAAAAAAGAGACAG
AGAACGAGCGAGAGAGAAAAAGCAAAAAAAAGAGAAAAAAACAAGCAAAC
GAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_m19.b1 MSMg01no142_m19.b1 CHROMAT_FILE:
MSMg01no142_m19.b1 PHD_FILE: MSMg01no142_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:56 2005
         (579 letters)



>mm_chr12_66786707_66787685
          Length = 979

 Score =  942 bits (487), Expect = 0.0
 Identities = 527/541 (97%), Gaps = 4/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 42  acttatcctaattgtcatggaccaaagcagctctaaatgctcattggagaagcacattgt 101
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 240 acttatcctaattgtcatagaccaaagcagctctaaatgctcattggagaagcactttgt 299

                                                                       
Query: 102 tttttcagtaggtagcagtgaatactaagactcacaactggtcaaaatgcagtgactgca 161
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtttcagtaggtagcagtgaatactaagactcacaactggtcaaaatgcagtgactgca 359

                                                                       
Query: 162 ttgtattaaatgggggatttatatcagacccttcccagaaggctcagggatcatctcaga 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttgtattaaatgggggatttatatcagacccttcccagaaggctcagggatcatctcaga 419

                                                                       
Query: 222 agtgggagcagaacagcgttagcagacagaggtagtagaatactgtagtgagatagggtt 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agtgggagcagaacagcgttagcagacagaggtagtagaatactgtagtgagatagggtt 479

                                                                       
Query: 282 ttctgtatttgaaaacacagaataacagagacactgcattcataaagtct--atgctgaa 339
           ||||| |  |||||||||||||| ||||||||||||||||||||||||||  ||||||||
Sbjct: 480 ttctggacatgaaaacacagaatgacagagacactgcattcataaagtctctatgctgaa 539

                                                                       
Query: 340 gacctttacaagatcaaagtatacttcacatgcaaaaccctgagcagcttttcacattct 399
           |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 540 gacctttacaagatcaaagtatacttcacatgcaaa-ccctgagcagtttttcacattct 598

                                                                       
Query: 400 ggtgaatggccctatacctatgtccatactgggagccctgagagaacttagtgagttaaa 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ggtgaatggccctatacctatgtccatactgggagccctgagagaacttagtgagttaaa 658

                                                                       
Query: 460 a-aaaaatagtacaatgacaggagtctgatatagctgtctcctgagaggctctgccagag 518
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ataaaaatagtacaatgacaggagtctgatatagctgtctcctgagaggctctgccagag 718

                                                                       
Query: 519 cctgacaaatacagatgcagatgctcacaaccaaccattggactgagcacaggaaccccc 578
           |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 719 cctgacaaatacggatgcagatgctcacaaccaaccattggactgagcacagggaccccc 778

            
Query: 579 a 579
           |
Sbjct: 779 a 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)