Query= MSMg01no144_g02.b1 MSMg01no144_g02.b1 CHROMAT_FILE:
MSMg01no144_g02.b1 PHD_FILE: MSMg01no144_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:12 2005
(522 letters)
>mm_chr12_78178043_78178964
Length = 922
Score = 915 bits (473), Expect = 0.0
Identities = 508/523 (97%), Gaps = 6/523 (1%)
Strand = Plus / Plus
Query: 6 gaattcaggaggatccggaattcaaggtcaagatcatcctctaccacatatgggagttca 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcaggaggatcgggaattcaaggtcaagatcatcctctaccacatatgggagttca 259
Query: 66 aggccaacctgggttacacgaaacctagtctcaaaaaaaaaaaaaaaaaaa------gcg 119
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 260 aggccaacctgggttacacgagacctagtctcaaaaaaaaaaaaaaaaaaaaaaaaagcg 319
Query: 120 caaagacgaagcaaaccaaccaaggactaggttttccccctcgtgtgaattctcaaaggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caaagacgaagcaaaccaaccaaggactaggttttccccctcgtgtgaattctcaaaggc 379
Query: 180 aaaccagaaataaacataaaaacgagcccttaaatgtaattttctttctgtcttttctgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaccagaaataaacataaaaacgagcccttaaatgtaattttctttctgtcttttctgt 439
Query: 240 gggttagatgtttcttcacctctactaccaatgaaaaatagatttgtgggcttttagtcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggttagatgtttcttcacctctactaccaatgaaaaatagatttgtgggcttttagtcc 499
Query: 300 ctagtgtgacagtttaagagctaccaccctgcttagtagttgggtgctgagggctccacc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctagtgtgacagtttaagagctaccaccctgcttagtagttgggtgctgagggctccacc 559
Query: 360 cttcccaataggccaacgtcttaaaacaggcccgaggggctggatgtggggcatatgctc 419
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 cttcccaataggttaacgtcttaaaacaggccccaggggctggatgtggggcatatgctc 619
Query: 420 ttgcagtgccagcaggctgagggaggaggactgcttgaccccacgagtccaaggttaact 479
||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct: 620 ttgtagtgccagcaggctgagggaggaggactgcttgaccccaggagttcaaggctaact 679
Query: 480 tggggaacatagcaagattttgggtagtgaaattcctttgctc 522
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tggggaacatagcaagattttgggtagtgaaattcctttgctc 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_g02.g1 MSMg01no144_g02.g1 CHROMAT_FILE:
MSMg01no144_g02.g1 PHD_FILE: MSMg01no144_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:12 2005
(474 letters)
>mm_chr12_78289902_78290775
Length = 874
Score = 839 bits (434), Expect = 0.0
Identities = 464/474 (97%)
Strand = Plus / Minus
Query: 1 tgaaattaaacaaaggcaaatagattttattcaacaggcaagagttagttaaacatctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaaattaaacaaaggcaaatagattttattcaacaggcaagagttagttaaacatctgc 566
Query: 61 ctggtgtattgttctcagactgcaaaagtgacacaaaagagtcctagtccctgccctgaa 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 ctggtgtattgttctcagactgcaaaagtgacacaaaagagtcctagtacctgccctgaa 506
Query: 121 gcaaccggggtggagcaggaaatgtgaataagtaatctgatgcagacaagaaaggtatag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 gcaaccggggtggagcaggaaatgtgaataagtaatctgatgcagacaagaagggtatag 446
Query: 181 gttgccagggagggaggggaggtgtctattcaaccctcaggaggtaggacggttcccctg 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 gttgccagggagggaggggaggtgtctattcaaccctcaggaggtaggacagttcccctg 386
Query: 241 gcgccacctcaagagtaggagccagccagaggagtaaagtcaggagagctgtttcagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcgccacctcaagagtaggagccagccagaggagtaaagtcaggagagctgtttcagaca 326
Query: 301 gttccaagctatgacagtcccaactgataatctcccatgcaccgaatcccgtgtttctga 360
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 325 gttccaagctatgacagtcccaactgattatctcccatgcagtgaatcccgtgtttctga 266
Query: 361 ccagcagtgcctctcttgtttttggaggcaaatggacaattcactgtgactttttaaatt 420
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 265 ccagcagtgcctctcttgtttttggagggaaatggacaatttactgtgactttttaaatt 206
Query: 421 aagggtgtgatggttagctttcgctgtcaacctgacataatccataaatcacct 474
||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 205 aagggtgtgatggttagctttcgctgtcaacctgacacaatccagaaatcacct 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
