BAC Information

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BAC

Clone NameMSMg01-144G14
Chromosome12 (Build37)
Map Location 111,894,437 - 112,042,821
singlet/doubletdoublet
Overlap geneDync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a
Upstream geneB830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik
Downstream geneRage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144G14.T7 (MSMg01no144_g14.b1)MSMg01-144G14.TJ (MSMg01no144_g14.g1)
ACCAG348489AG348490
length725721
length of high quality
(start - end)
252 (69 - 320)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no144_g14.b1 PHD_FILE: MSMg01no144_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:14 2005CHROMAT_FILE: MSMg01no144_g14.g1 PHD_FILE: MSMg01no144_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,042,571 - 112,042,821)(111,894,437 - 111,894,721)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGCCGCGGA
ATTCAACCAGATCACGCAGACACATGCCAGCAGATGCCAACCCTCCGGAA
GCCCCATGTGACTGATGTCCGAGCTAACTCTGTTCTGTGCTGCGGCAGAG
GCTGTGGAAACGCACAGTATGTGGTTTCAGCTTTCAAGGACAGCAGGGGG
ACTCTAAGCCATGAGAAAAGGTCATGTGCCTACACCAAAGTCCCCATGCC
GGGCAGCCCCATAGTGTGTGGACTTGGCCCACAGCCAAGACTTCTCCGAC
AAGACGCGTTCTTAACAGATTGACTGGAGGATCAAGGACTGTGATACACA
AAAAAACGAAGCACTTCAACACCAACCAAGAAATGAGGCCAAAACAAAAA
GATCTATACAATTCACCCCCAAAAAAGGATAAACAAATAGTATATTCAAG
ATAATTTTAATATTAATGTTTTTGTGAATTAGAAATATCACTCTTAAATG
ATGAAAATTACTAGTGGGAGTGACTATTTACCCCCATTTCAGAATTACAT
TATTTACACATATAATACAGACTTGATTGCATCGGAAACAACAGTACTAA
AATAAATGTTAACAGATAAAAAGGGTATCTCCTCTCGTATCGTGAGGTCG
GTAGCCCGTTACCCCATAGCCAAAGTCATTTCTATTAGCACTAACCTATT
TAAGTGCCAACAATGCTTTATGTCC
ACGATGTAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTGTAGTGTTCGGTGTGGTCCTAAA
CATGTCATTTGATTTCTTTGTCCTCCCTTAGGTAAACCGGAGCACTGCAC
TTCTAAAGAGTTTATCTGCCGAAAGGGAACGTTGGGAAAAGACGAGTGAA
ACTTTCAAAAACCAGATGTCTACCATTGCTGGGGACTGCCTCCTGTCGGC
GGCCTTCATTGCTTACGCTGGTTACTTTGACCAGCAAATGCGCCAGAACT
TGTTCACCACCTGGTCTCATCTCTTACAGCAAGCCAACATCCAGGTAAGA
GGCACTCAGAGAGAACAGTCGGCCTGGGCACAGCTGCGCTGGCACAGTCT
GACAGTCACAGCCCCCCCACAACCAGTGTCCTCTTTCAGTTCCGCACAGA
CCTTGCCCGGACGGAGTACCTCTCCAATGCTGACGAACGCCTCCGCTGGT
ATGCCAGCTCTCCGCCTGCCGACGATCTGTGCACAGAGAATGCCATCATG
CTATAACGATTCAATAGGTGTGTGTTCCCCGGCCGAACGTGCACCTAGAG
ATTGGTGTCGCCCGCCCTGCTAATTCGTACTCATTCAGCTTGTCCGATTA
TCGCCACTTGAATCGTCTGTGCCGTAGGTATTGCTTCCAGCCTTCGTTTG
TCTTTTTTCCCCACTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_g14.b1 MSMg01no144_g14.b1 CHROMAT_FILE:
MSMg01no144_g14.b1 PHD_FILE: MSMg01no144_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:14 2005
         (252 letters)



>mm_chr12_112042371_112043022
          Length = 652

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacacatgccagcagatgccaaccctccggaagccccatgtgactgatgtccgagctaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gacacatgccagcagatgccaaccctccggaagccccatgtgactgatgtccgagctaac 392

                                                                       
Query: 61  tctgttctgtgctgcggcagaggctgtggaaacgcacagtatgtggtttcagctttcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tctgttctgtgctgcggcagaggctgtggaaacgcacagtatgtggtttcagctttcaag 332

                                                                       
Query: 121 gacagcagggggactctaagccatgagaaaaggtcatgtgcctacaccaaagtccccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gacagcagggggactctaagccatgagaaaaggtcatgtgcctacaccaaagtccccatg 272

                                                                       
Query: 181 ccgggcagccccatagtgtgtggacttggcccacagccaagacttctccgacaagacgcg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 271 ccgggcagccccatagtgtgtggacttggcccagagccaagacttctccgacaagacgcg 212

                      
Query: 241 ttcttaacaga 251
           || ||||||||
Sbjct: 211 tttttaacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no144_g14.g1 MSMg01no144_g14.g1 CHROMAT_FILE:
MSMg01no144_g14.g1 PHD_FILE: MSMg01no144_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:14 2005
         (286 letters)



>mm_chr12_111894237_111894922
          Length = 686

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgtagtgttcggtgtggtcctaaacatgtcatttgatttctttgtcctcccttaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgtagtgttcggtgtggtcctaaacatgtcatttgatttctttgtcctcccttaggt 260

                                                                       
Query: 61  aaaccggagcactgcacttctaaagagtttatctgccgaaagggaacgttgggaaaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaccggagcactgcacttctaaagagtttatctgccgaaagggaacgttgggaaaagac 320

                                                                       
Query: 121 gagtgaaactttcaaaaaccagatgtctaccattgctggggactgcctcctgtcggcggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtgaaactttcaaaaaccagatgtctaccattgctggggactgcctcctgtcggcggc 380

                                                                       
Query: 181 cttcattgcttacgctggttactttgaccagcaaatgcgccagaacttgttcaccacctg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcattgcttacgctggctactttgaccagcaaatgcgccagaacttgttcaccacctg 440

                                                        
Query: 241 gtctcatctcttacagcaagccaacatccaggtaagaggcactca 285
           |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctcatcacttacagcaagccaacatccaggtaagaggcactca 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)