BAC Information

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BAC

Clone NameMSMg01-144P06
Chromosome12 (Build37)
Map Location 114,380,988 - 114,381,369
singlet/doubletsinglet
Overlap geneCrip2
Upstream geneKif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1
Downstream geneCrip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144P06.T7 (MSMg01no144_p06.b1)MSMg01-144P06.TJ (MSMg01no144_p06.g1)
ACCAG348881AG348882
length714716
length of high quality
(start - end)		382 (72 - 453)636 (75 - 710)
definitionCHROMAT_FILE: MSMg01no144_p06.b1 PHD_FILE: MSMg01no144_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:54 2005CHROMAT_FILE: MSMg01no144_p06.g1 PHD_FILE: MSMg01no144_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAAGAGAGCGCGGA
ATTCCGGCTCTTCTCGCTCTCAGCTCAGGCCCTTCTTCCTGCCCACTTCT
CCACCCTTTTCCTGCCTTACTCCCTTGGGGAGGCCCAGGCTTCCGTCCAT
TGGGATGTGGCTCGGCAGTCATTGCCCTGGCGGTTGCGGGGTGGGGTCCA
CAGCCCTCAGCTGCTCATCACAAACCTTTGGCGCCAAACTGGCAGCTGGA
GGCAGTGGGTTGGGTGGAGTGAGGTCTCAGGGCTTAGGACGAGGAAACCA
AATAGGGATCTTTCCTGGTGGTCCCGCGGCAGCCAGGACTGGTGTTCCCT
CACCTGGTGCTGAAAATCAAGGGCTTTTCTCTTGGCCTCGGGGACTCTGC
CTGGCTCTGTGGGCAGCCGGAGAGGTGTGAGGAGACGCACCATGAGGGTG
AGGCTTTGAGGAGCAAGGTATAATAAATAGGTGCAGAGAGCAAGACACTG
AGGGGTTAAACCAGGTGCACAGCCTGAGACCACTTTTTCGGGATGAGCAA
GGACAAAGGCCTCCAGGATGGCTGAGGGAGTCTCCTGTAACAGCAGACTA
ATCTCGGAGTCACCATGGGCGGGGTGGCAGTGGAGCTTGATGTCTTGCCG
GGAAAGCCAAATGCTTGGTTGTGCGACTGCTAATTTCTGGACCGCTCGAA
GAGGATGACCCCTT

NCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAACCAAATGGCAGAG
AAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATAA
AAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAACTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCACG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAG
AACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATTGAATACTAATCAGCTATTAAAAATGAATTTATG
AAATTCCAATCATTCACTCTTATACTGGTTTGTTTATCCATTCCTCTGGC
TCTCCTGAGGCTAAAGGGATTCAACTTCCAATACTTGCATTTGAAGCACA
CTGACAGTGATGGGCACATAAGAGAGGGAGCAGTGCCAGAGACGACGCCT
GGGTACAGAGACACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_p06.b1 MSMg01no144_p06.b1 CHROMAT_FILE:
MSMg01no144_p06.b1 PHD_FILE: MSMg01no144_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:54 2005
         (382 letters)



>mm_chr12_114380788_114381569
          Length = 782

 Score =  716 bits (370), Expect = 0.0
 Identities = 379/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctcaggcccttcttcctgcccacttctccacccttttcctgccttactcccttgggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctcaggcccttcttcctgcccacttctccacccttttcctgccttactcccttgggga 260

                                                                       
Query: 61  ggcccaggcttccgtccattgggatgtggctcggcagtcattgccctggcggttgcgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcccaggcttccgtccattgggatgtggctcggcagtcattgccctggcggttgcgggg 320

                                                                       
Query: 121 tggggtccacagccctcagctgctcatcacaaacctttggcgccaaactggcagctggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggtccacagccctcagctgctcatcacaaacctttggcgccaaactggcagctggag 380

                                                                       
Query: 181 gcagtgggttgggtggagtgaggtctcagggcttaggacgaggaaaccaaatagggatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtgggttgggtggagtgaggtctcagggcttaggacgaggaaaccaaatagggatct 440

                                                                       
Query: 241 ttcctggtggtcccgcggcagccaggactggtgttccctcacctggtgctgaaaatcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctggtggtcccgcggcagccaggactggtgttccctcacctggtgctgaaaatcaag 500

                                                                       
Query: 301 ggcttttctcttggcctcggggactctgcctggctctgtgggcagccggagaggtgtgag 360
           |||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||
Sbjct: 501 ggcttttctcttggcctcggggactctgcctggctctgtggggagggggagaggtgtgag 560

                                 
Query: 361 gagacgcaccatgagggtgagg 382
           ||||||||||||||||||||||
Sbjct: 561 gagacgcaccatgagggtgagg 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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