BAC Information

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BAC

Clone NameMSMg01-145A20
Chromosome12 (Build37)
Map Location 113,151,901 - 113,152,408
singlet/doubletsinglet
Overlap genenone
Upstream gene4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b
Downstream geneLOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145A20.T7 (MSMg01no145_a20.b1)MSMg01-145A20.TJ (MSMg01no145_a20.g1)
ACCAG348957AG348958
length709709
length of high quality
(start - end)
509 (69 - 577)559 (70 - 628)
definitionCHROMAT_FILE: MSMg01no145_a20.b1 PHD_FILE: MSMg01no145_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:02 2005CHROMAT_FILE: MSMg01no145_a20.g1 PHD_FILE: MSMg01no145_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCGCTATACGACTCCTATATTCAGGACGCCGCGGAATTC
TGAGGACATTGCCTTGAGAAGTTCCCGATGACATTCCACAGGTGTAGAGA
GACCTTGATTATATTTTTCAATGTCCAGGGACAGTTAAGAAGGCTAGCTG
GCCTGCTTTAGGGGAGAGTAGAAACGAGGGGTGGGGTCTTGTCTAGGATG
TGGTTTGAATGGTGGGACTTGGGGAGGGCGGAAGAAAGGCACAGGATGGC
CCTAAGCTTCTGCTCAATGCTGGGGACTGGCGTGGGGAGAGCAGATGTAG
TGGAGGGAGGCTCCGAGATGACTCCAGCTTTGATATTTTCCAGCGTTACA
GTTCAGGCCTCTCCTTCTTCGTCCAGCATGAGTCTGCACCAAATCTGTAG
TCCTACCCTCACTTCCCCCCGAGCTAGCCTGGGCATGGCCCCACCACAGC
CACTCCACTCTCTCTACCCAGGCTTCCTAGCCTGGGCATTCCCCCCCACC
CCACGGCCGTTTCATGAGGGCTTCCTCCCCTTTCCCCTCAGCACTCACCT
CTGACTTCCAGTTTAACCTCCCTGTACCAGAAGTGGGCTCCTAAACAGGA
AACCAAACCCAGCACTGTAAGTTGTAAAGCCTGAGCAGCTGCCACAGTCC
TGAGATGGATGGGGAGGTTCTAGGAGAACAAAGTTCTCCAAATCTTGTGG
ACCCTGTCT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCTGGCTACCAGAGAAACCCTATCTTGAGA
AAACCGAAAAACCAAAACAAAACAAAATGGAATTCAACGACTATCAGAGC
CATTTGCTATTCTGAATTGAGATTATTAATTCATTCTGGTCAGGGGGGCT
GAAAGTCAGCCACAATCATAAGAGGCAACAGTGAAGGGAAACACATTACT
GGGACAGCTGATGCTGGGCAGCTGGTGCAGGGAAGCTGGAGCTAAGAAAT
TAGTAGTGACTGAGAAGAGCCCAGCATCACCGAGGTGGAATCTTTTGGGA
AGTGTTTTCTGAAAGTCAGCATACAGAAGCTGCGTTCCAGTTATGACCAA
AGTTGTACCTTGCGCTACAGCTGAACTCAGTAGTGTAAACGTCCCAATAT
GGAGCTGGTTTTGAGAACATGGAGAGATCATGGAGAACAGCTGAGGCTTG
GTGCTGCTGAGGTCAGGAGAGGCCACTGGGGAAGACACAACCCAGTTGTA
GGAGAAGACCCCAGCATTTTGCAGATGTCAGTAGAATGGGTGATCCCAAG
AGCAGCAGTGGAGTGGAGCCACTGGAGCCCAGAAGACAAGCTGCGTGTGC
TGTAGAGGGCAGAGCTGGTGAAGCCAGCCAAGCTCCTTGGAGAAGTCATG
AAGATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_a20.b1 MSMg01no145_a20.b1 CHROMAT_FILE:
MSMg01no145_a20.b1 PHD_FILE: MSMg01no145_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:02 2005
         (509 letters)



>mm_chr12_113151701_113152608
          Length = 908

 Score =  891 bits (461), Expect = 0.0
 Identities = 497/509 (97%), Gaps = 1/509 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagttcccgatgacattccacaggtgtagagagaccttgattatatttttcaatgtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagttcccgatgacattccacaggtgtagagagaccttgattatatttttcaatgtccag 260

                                                                       
Query: 61  ggacagttaagaaggctagctggcctgctttaggggagagtagaaacgaggggtggggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacagttaagaaggctagctggcctgctttaggggagagtagaaacgaggggtggggtc 320

                                                                       
Query: 121 ttgtctaggatgtggtttgaatggtgggacttggggagggcggaagaaaggcacaggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtctaggatgtggtttgaatggtgggacttggggagggcggaagaaaggcacaggatg 380

                                                                       
Query: 181 gccctaagcttctgctcaatgctggggactggcgtggggagagcagatgtagtggaggga 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gccctaagcttctgctcaatgctggggactggtgtggggagagcagatgtagtggaggga 440

                                                                       
Query: 241 ggctccgagatgactccagctttgatattttccagcgttacagttcaggcctctccttct 300
           ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctctgcgatgacgccagctttgatattttccagcgttacagttcaggcctctccttct 500

                                                                       
Query: 301 tcgtccagcatgagtctgcaccaaatctgtagtcctaccctcacttccccccgagctagc 360
           ||||||||||||||||||||||||||||| |||||||||||||||||  |  ||||||||
Sbjct: 501 tcgtccagcatgagtctgcaccaaatctgcagtcctaccctcacttcatcaggagctagc 560

                                                                       
Query: 361 ctgggcatggccccaccacagccactccactctctctacccaggcttcctagcctgggca 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggcatggtcccaccacagccactccactctctctacccaggcttcctagcctgggca 620

                                                                       
Query: 421 ttcccccccaccccacggccgtttcatgagggcttcctcccctttcccctcagcactcac 480
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccccccc-ccccacggccgtttcatgagggcttcctcccctttcccctcagcactcac 679

                                        
Query: 481 ctctgacttccagtttaacctccctgtac 509
           |||||||||||||||||||||||||||||
Sbjct: 680 ctctgacttccagtttaacctccctgtac 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 908
Length adjustment: 10
Effective length of query: 499
Effective length of database: 898
Effective search space:   448102
Effective search space used:   448102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)