Query= MSMg01no145_j22.b1 MSMg01no145_j22.b1 CHROMAT_FILE:
MSMg01no145_j22.b1 PHD_FILE: MSMg01no145_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:45 2005
(540 letters)
>mm_chr12_109224971_109225910
Length = 940
Score = 959 bits (496), Expect = 0.0
Identities = 528/542 (97%), Gaps = 8/542 (1%)
Strand = Plus / Minus
Query: 3 gaattccgaggaccctgc-gtccttgcagcttggtagacaaggcctgtttattatttctg 61
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaattccgaggaccccgcagtccttgcagcttggtagacaaggcctgtttattatttctg 681
Query: 62 tagattaacagtaaaggaaacacagataactttcagttatttattgtaaaataaatgtgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagattaacagtaaaggaaacacagataactttcagttatttattgtaaaataaatgtgt 621
Query: 122 caattcatgtgtaaagcaagctgctcaaagataattgagtctttatattttaagagggga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caattcatgtgtaaagcaagctgctcaaagataattgagtctttatattttaagagggga 561
Query: 182 gctaggaatcacgggcccttctccactcaggcacccggaaatccttccagctgctgtcca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctaggaatcacgggcccttctccactcaggcacccggaaatccttccagctgctgtcca 501
Query: 242 ggcccctggcacactggcctccatgggtccactgctcctgtctcccgcctgtggcttcag 301
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 ggcccctggcacactggtctccatgggtcccctgctcctgtctcccgcctgtggcttcag 441
Query: 302 ggtcccttccctgctgctctgtgccctgctgctgtctccactggccttgatggtccctgg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtcccttccctgctgctctgtgccctgctgctgtctccactggccttgatggtccctgg 381
Query: 362 cagccgc---tgccccaccacgtggctgctgattcttgggactttgctcctagctggcca 418
||||||| || | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagccgctggtg----agcaggtggctgctgattcttgggactttgctcctagctggcca 325
Query: 419 tcatggctgagtccttggtggggtggctatgctactggaatgttctgaggtctgcagcct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcatggctgagtccttggtggggtggctatgctactggaatgttctgaggtctgcagcct 265
Query: 479 tcactttggtggggcagcctttcctctcagcctgacacttgtagaagcagggccccagcg 538
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 tcactttggtggggcagcctttcccctcagcctgacacttgtagaagcagggccccagcg 205
Query: 539 at 540
||
Sbjct: 204 at 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_j22.g1 MSMg01no145_j22.g1 CHROMAT_FILE:
MSMg01no145_j22.g1 PHD_FILE: MSMg01no145_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:45 2005
(540 letters)
>mm_chr12_109063647_109064586
Length = 940
Score = 998 bits (516), Expect = 0.0
Identities = 534/540 (98%)
Strand = Plus / Plus
Query: 1 ctccttcccagggaccacgctgcaactagcctctgggtttggcatcttgtgccaggtgat 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccttcccagggaccacgctgcaattagcctctgggtttggcatcttgtgccaggtgat 260
Query: 61 ggtgatggtggcccagagctcaagcagaaagggtgttgtctgtgactgattggtcatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgatggtggcccagagctcaagcagaaagggtgttgtctgtgactgattggtcatgtc 320
Query: 121 tgccgctgaggtaagactgcaattggcaactgtggactcacccaggccttagatcagtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccgctgaggtaagactgcaattggcaactgtggactcacccaggccttagatcagtcc 380
Query: 181 acatccacatcagttagagaagctgggtttttaatcgaaagattctgcaaggatgaagct 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatccacatcaattagagaagctgggtttttaatcgaaagattctgcaaggatgaagct 440
Query: 241 tatatcctgctgccaatacctctctacccagcccctctggtctacctttgtctgccctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatcctgctgccaatacctctctacccagcccctctggtctacctttgtctgccctcc 500
Query: 301 agctaggtgggttctgcctctagggaaaagactacttcaagttcccccccacacccccac 360
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 501 agctaggtgggttctgcctctagggaaaagactacttcaagttccttcccagacccccac 560
Query: 361 cagcacacagcccaaggtcctcgggagttcttgtggggaaaattagcttatctaaatatg 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 cagcacacagcccaaggtcctcgggagttcttgtggggaacattagcttatctaaatatg 620
Query: 421 gtgtggcaatggatccataaggtgggtgggcggacatgcaaatggacacaagtctcagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtggcaatggatccataaggtgggtgggcggacatgcaaatggacacaagtctcagaa 680
Query: 481 aacactcccccacctgtcccacagagaagaagagaactgggaaagactcctccagccccg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacactcccccacctgtcccacagagaagaagagaactgggaaagactcctccagccccg 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
