BAC Information

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BAC

Clone NameMSMg01-145K10
Chromosome12 (Build37)
Map Location 13,846,429 - 13,846,924
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
Downstream geneAW125753, LOC100043256, Map1lc3-ps7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145K10.T7 (MSMg01no145_k10.b1)MSMg01-145K10.TJ (MSMg01no145_k10.g1)
ACCAG349398AG349399
length703716
length of high quality
(start - end)
493 (67 - 559)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no145_k10.b1 PHD_FILE: MSMg01no145_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:48 2005CHROMAT_FILE: MSMg01no145_k10.g1 PHD_FILE: MSMg01no145_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGTGTCCAAATTACCAAGCAGTATTGAAACCCTTCTCTCTTGA
TCCTTCACTCTCTCCATATACTATTTTGAAGTCTCTTATAATTTCAAAAG
CCTACCTTCTCAAACGGTAATAAACATTTAGCCCCACTAAAGACAAATCC
AATTAAATTGGTTTGAGAGCCATGAATTAAAAGGTTGGGGGGGGATTAGA
TAAATCCCTAGACACAGATTCTAGCCACTATAAACCAAGTTTCCATTTTG
ACAACCAAATCATCTGCTCCATATCTCAGTTTACAATCTGCCCAAATAAA
AGCCTTAAAACCAAATTAAAACTTGGGTGATTATTTTCTGGGTACCTCCC
TCTATTCATCTTTCTGCTATGTCCTCTCTCCTTTATCAGGAGCCAGGAAA
CTCCATCTTAGACTTGCTGAGAATCTGTAGTTCTATAGGTTTACATGCTA
GGAAAAAAACACCCTCTTCTATCTGAGTTGAATTAATTTATGTTATAGAT
TCACAGGGCAAGACTAAAGCCCAGGGAAACAAAAATTGTTCATTTTATAT
GTGCATGCATGTGGCTGTAGAGACTATCTAGCATAGGTAGTTGGATTCCA
TAAAGCTGGTGTTATACGTAGATTGCGAGTTACCTTATAAGGGCGCTGGT
GAG
CCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTCTATCTCTGTGAAGAATT
GAGTTGAAATTTTGATGAGGATTGCATTGAATTTATAGACTGTTTTTTTT
TTGTAAGATGGCTATTTTAACTGTTGATTCTACTGATCATGGACTGTGGA
AGATCTTCCTATCTTCTGAGGTCTTCTTCAATATCTTTCTTCATAGACTT
GACTGAGAAAAATGAAGATACTTATAGCCAACCATTGGATTGCATTTGGA
GACTAATATGGAAGACTTATATGATTAACTGAAGGAGGTGAGGGGATTGC
AACCCTATAGGGAGAACAACAGTGACAAGTAACCCTGACCTTTCAGAGTT
CCTAGAGACTAAGCCACCACCATTGAGCTGGTTAGTGGCCCTGGGCACAT
ATGCAGCAGAGGATTGCCTTGTTGGCCTCAGTGAGATAGGATGTTCTTAT
TCTTGTGGAAACTTGATGCTCCAAGGAAAGGGATGTTGTTGTACTTGATG
TACGCATGCCCTTTCTTCTCCTCTTTTCCCTTTTTATCTTTTGTACTCCT
ATTCCATCCCTATTTAATTTGTTTTTCTGCCTTTCTATTAACATTTCATA
TATCTTTTACTTACTATTATCTTTTATCCTTTCCCCTTTCCCTGTTTCCT
TACTTTTCTTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_k10.b1 MSMg01no145_k10.b1 CHROMAT_FILE:
MSMg01no145_k10.b1 PHD_FILE: MSMg01no145_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:48 2005
         (493 letters)



>mm_chr12_13846229_13847124
          Length = 896

 Score =  890 bits (460), Expect = 0.0
 Identities = 487/496 (98%), Gaps = 3/496 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaccaagcagtattgaaacccttctctcttgatccttcactctctcca-tatactatt 59
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 attaccaagcagtattgaaacccttctctcttgatccttcactctctccaatatactatt 260

                                                                       
Query: 60  ttgaagtctcttataatttcaaaagcctaccttctcaaacggtaataaacatttagcccc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagtctcttataatttcaaaagcctaccttctcaaacggtaataaacatttagcccc 320

                                                                       
Query: 120 actaaagacaaatccaattaaattggtttgagagccatgaattaaaaggttgggggggg- 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 actaaagacaaatccaattaaattggtttgagagccatgaattaaaaggttggggggggg 380

                                                                       
Query: 179 attagataaatccctagacacagattctagccactataaaccaagtttccattttgacaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagataaatccctagacacagattctagccactataaaccaagtttccattttgacaa 440

                                                                       
Query: 239 ccaaatcatctgctccatatctcagtttacaatctgcccaaataaaagccttaaaaccaa 298
           ||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ccaaatcatctgcaccaaatctcagtttacaatctgcccaaataaaagtcttaaaaccaa 500

                                                                       
Query: 299 attaaaacttgggtgattattttctgggtacctccctctattcatctttctgctatgtcc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaaaacttgggtgattattttctgggtacctccctctattcatctttctgctatgtcc 560

                                                                       
Query: 359 tctctcctttatcaggagccaggaaactccatcttagacttgctgagaatctgtagttct 418
           | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctccattatcaggagccaggaaactccatcttagacttgctgagaatctgtagttct 620

                                                                       
Query: 419 ataggtttacatgctaggaaaaaaa-caccctcttctatctgagttgaattaatttatgt 477
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 621 ataggtttacatgctaggaaaaaaaacaccctcttctatctgagttgaatgaatttatgt 680

                           
Query: 478 tatagattcacagggc 493
           ||||||||||||||||
Sbjct: 681 tatagattcacagggc 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 896
Length adjustment: 10
Effective length of query: 483
Effective length of database: 886
Effective search space:   427938
Effective search space used:   427938
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)