BAC Information

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BAC

Clone NameMSMg01-145K16
Chromosome12 (Build37)
Map Location 62,537,767 - 62,537,991
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677
Downstream geneNanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145K16.T7 (MSMg01no145_k16.b1)MSMg01-145K16.TJ (MSMg01no145_k16.g1)
ACCAG349410AG349411
length708702
length of high quality
(start - end)
225 (194 - 418)---
definitionCHROMAT_FILE: MSMg01no145_k16.b1 PHD_FILE: MSMg01no145_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:49 2005CHROMAT_FILE: MSMg01no145_k16.g1 PHD_FILE: MSMg01no145_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTTGCTAAATGAATCACTAACATCAGGGATTTAATATT
ATCCTTGGCATAATAGTTTGTTTAAGGACAGCCTGAGCTTCCTAACGCTT
TTGTCTCAGAAGCGAGCCTCGACGTGAGTAGTTATGCCAGAGTCCCCACT
CTCTTCCTTTCTTCTTCCTCTCTACACATAAAACCTTCAGAATGCAAGTA
TTGGTCTCCATTGTGATTACAGATTTATAATCCTACTCACCTCCCAAAAT
ATCACCTCTTGTAAAATTCAAAATCATTTTAAAATTTCAGATTCTTTACA
GTTCATAGTGGAGTTGAACTGTAAAGTTTGTTAACACCCACACAAAATGT
GGAGTTTGTTGACACAAAACCCCCCCTGTTAGGATTATCACCATTACCAA
CCGAGCTATCTTGCCTGTCTTTGAATCATTATCTATGACAAGAATGCATA
GGACCTAATAATATGATCTTGAAGATTAAGCCAACTTGTGTTGACATAGT
ATAACGCCTGGATTTTTCTTGACCTCCATATTTTTAGCAGGTGTTTATTG
TGTGTGTGTGTGCCGCATTTCTTTTTTTCTTCCCTTTTTATTTTTCCCTA
TACATCTTTTTTCATTATCTACCTTCCCCCCTCTCTCTTCTAATCCTCTC
TTCCCCCA
NCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGATGANAACTGCTAGGGCATAA
GGGCCCACACCCCCTGAGCTGCTGCTCCCACAGGAGCCTCAATCTGCCTG
CATCGTTTTACAGCTTGGCTGCATGTGATCAAGGAAGGGCAGAATGCGCT
CGTGCAAAAGGCACGGAGCCAAGCGTGTGCCGAGAACTGGAAGTGCTGAA
TGTCTGCACATTGGTTACCGCTATTTTGACTCTTTCTCCCCATCAGTTGT
ATCATCAACATTCTGATACTACACAACAGGCCACTGGCGTAAGAAGCAAG
GACCACAGATCGAGGTCGCATGTGCAGAACCGGTTCTCCGATCGCTCTTC
CCCCCTCAAGGTGATTGTGCCTAACGAGTCATGATCTCACTGCGCACTCA
CTAAATGCACTCCGCTAAAGACCCTTTCACAGTGCACAGTGCTGTTGGCC
CAGGATTCCTCAACACACCCCCCCACACTGGATCGCATCATATTGACCCC
CAAAGTTTGAACACTATGCCTGGACATTCGAATCCTGTGTAGACTACACT
GGAGGTCCCTTAAAGCACACCTCAGGCACTAGGATAGGACCGAGCTATCT
GCCCCCATACAGTCACAAAGCTGTTGAATCCGATATGAATGGGAGCTCCT
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_k16.b1 MSMg01no145_k16.b1 CHROMAT_FILE:
MSMg01no145_k16.b1 PHD_FILE: MSMg01no145_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:49 2005
         (225 letters)



>mm_chr12_62537567_62538191
          Length = 625

 Score =  362 bits (187), Expect = e-104
 Identities = 216/227 (95%), Gaps = 4/227 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccactctcttcctttcttcttcctctctacacataaaaccttcagaatgcaagtattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccactctcttcctttcttcttcctctctacacataaaaccttcagaatgcaagtattg 260

                                                                       
Query: 61  gtctccattgtgattacagatttataatcctactcacctcccaaaatatcacctcttgta 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gtctccattgtgattacagatttataatcctacttacctcccaaaatatcacctcttgta 320

                                                                       
Query: 121 aaattcaaaatcattttaaaatttcagattctttacagttcatagtggagttgaactgta 180
           ||||||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 321 aaattcaaaatcagtttaaaatttcagactctctacagttaatagtggagttgaactgta 380

                                                          
Query: 181 aagtttgttaacacccacac--aaaatgtggagtttgttgacacaaa 225
           ||||||||| ||||  ||||  |||| ||||||||||||||||||||
Sbjct: 381 aagtttgttgacac--acaccaaaaaagtggagtttgttgacacaaa 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)