Query= MSMg01no145_p13.b1 MSMg01no145_p13.b1 CHROMAT_FILE:
MSMg01no145_p13.b1 PHD_FILE: MSMg01no145_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:13 2005
(641 letters)
>mm_chr12_99334467_99335507
Length = 1041
Score = 1123 bits (581), Expect = 0.0
Identities = 623/637 (97%)
Strand = Plus / Plus
Query: 5 gaattctcagcacaaaccagtttattgctatttgaccattgagcatttctgctattcttt 64
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagcacgaacaagtttattgctatttgaccattgagcatttctgctattcttt 264
Query: 65 taaaattgtgtgtatgtgtgtgcatgtgtgcgtgaacatgcacgtgtatgaatttactct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaattgtgtgtatgtgtgtgcatgtgtgcgtgaacatgcacgtgtatgaatttactct 324
Query: 125 ctcatgcatgcatatatgtggacatcagaggacaggttgcaggagtcagttctctccttc 184
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 325 ctcatgcatgcatatatgtggacgtcagaggacagcttgcaggagtcagttctctccttc 384
Query: 185 tacttcatggctcttggggatcagactcagatagccagcttcagaagcaaactcccttac 244
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacctcatggctcttggagatcagactcagatagccagcttcagaagcaaactcccttac 444
Query: 245 ccactgagccatctcattggccccatgtctaatttcttgtcataagacagccaagtcaag 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccactgagccatctcactggccccatgtctaatttcttgtcataagacagccaagtcaag 504
Query: 305 ggagctggagctcagaagcttagattcaaagccatctccactcctgttaaccacacaggc 364
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 ggagctggagctcagaagcttagattcaaagccatctccacttctgttaaccacacaggc 564
Query: 365 tatgcagcctgcttcatcatgctgcatcttggtttccttaagtacaaatgaaaataatga 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 tatgcagcctgcttcatcatgctgcatcttggtttcctcaagtacaaatgaaaataatga 624
Query: 425 ttccccccacctttcagagttgttcccaggataaatgaaggtgaaagcatgacctatgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 ttccccccacctttcagagttgttcccaggataaatgaaggtgaaagcacaacctatgtt 684
Query: 485 catgactgttgtcattatcattattgtcactgtgtgcccaaccctggacctgcagaggta 544
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 685 catgactgttgtcattatcattatcgtcattgtgtgcccaaccctggacctgcagaggta 744
Query: 545 aataagaatcttcaggcacatgcttgttggagctataaagaaatcacaaatgtaaattaa 604
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 745 aataagaatcttcaggcacatgcttgttggagctagaaagaaatcacaaatgtaaattaa 804
Query: 605 aaccttcaatttaataaggctttgctgtgtctagtca 641
|||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaccttcaatttaataaggctttgctgtgtctagtca 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_p13.g1 MSMg01no145_p13.g1 CHROMAT_FILE:
MSMg01no145_p13.g1 PHD_FILE: MSMg01no145_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:13 2005
(590 letters)
>mm_chr12_99409224_99410213
Length = 990
Score = 899 bits (465), Expect = 0.0
Identities = 501/521 (96%), Gaps = 16/521 (3%)
Strand = Plus / Minus
Query: 71 ccaatccaagtattacataacccgggtgcattggtatatatatatatatatctgttatct 130
|||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 990 ccaatccaagtattacataacccgggtgcattgg----------tatatatctgttatct 941
Query: 131 cagtacttaagatgtaggattga-agttccaggtcattattgcctagtggaatttgaagc 189
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 940 cagtacttaagatgtaggattgaca-ttccaggtcattattgcctagtggaatttgaagc 882
Query: 190 tagccttgtctatataaaatcctgtctcaagcaagcaagcaagcaagcaagcaagcaagc 249
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 881 tagccttgtctacataaaatcctgtct----caagcaagcaagcaagcaagcaagcaagc 826
Query: 250 aagcaagcaagcaagcaattaagcaaataagcaaggaaatgaggaagaagtaataaggta 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 aagcaagcaagcaagcaattaagcaaataagcaaggaaatgaggaagaagtaataaggta 766
Query: 310 gatatgataaatctgtcttctagagagaaagaagtgtgtagttctctgcccatgttccta 369
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 765 ggtatgataaatctgtcttctagagagaaagaagtatgtagttctctgcccatgttccta 706
Query: 370 agagagtctctataccaatcctacctataaatattaggcagtttggtgggtaccacagac 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agagagtctctataccaatcctacctataaatattaggcagtttggtgggtaccacagac 646
Query: 430 cagcatgtgactctgatccagaaatccagaacgtgatggatttgctggccaattactagg 489
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cagaatgtgactctgatccagaaatccagaacgtgatggatttgctggccaattactagg 586
Query: 490 agagtggagtaaagagagattgtcaataagttgatgtagactatattccagcatttttct 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agagtggagtaaagagagattgtcaataagttgatgtagactatattccagcatttttct 526
Query: 550 aggcaaggaaagcagattctgttgagcagatacccagggtc 590
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aggcaaggaaagcagattctgttgagcagatacccagggtc 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
