Query= MSMg01no146_e10.b1 MSMg01no146_e10.b1 CHROMAT_FILE:
MSMg01no146_e10.b1 PHD_FILE: MSMg01no146_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:51 2005
(461 letters)
>mm_chr12_57077638_57078496
Length = 859
Score = 758 bits (392), Expect = 0.0
Identities = 442/462 (95%), Gaps = 8/462 (1%)
Strand = Plus / Minus
Query: 1 tttttatagtagattttgttctttcacaccctccacacatgcaccccg---accccttcc 57
|||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 657 tttttatagtagattttgttctttcaca-actccacacatgcaccccgagta----ttcc 603
Query: 58 gctcattcttcccctgaccctctcctacctcatgccctcctctaacagacttcgttgctc 117
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 602 gctcattcttcccctgaccctctcctaccttatgccctcctctaacagactccgttgctc 543
Query: 118 actacaaatccatttaccctattaccgattttgattttgtagagtgtcctacagagtttg 177
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 542 actacaaatccatttaccctattagcgattttgattttgtagagtgtcctacagagtttg 483
Query: 178 cccagggctgtctgtgtagtcttcaattcagaaataaccaaaagagcctggtgggctccc 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 482 cccagggctgtctgtgtagtcttcaattcagaaataaccaaaagagcctggtggactccc 423
Query: 238 cagtgggtaagaacatgggtattaagctttaccatctcccagcatctattggctgccaat 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 422 cagtgggtaagaacatgggtattaagctttaccatctcccagcatctgttggctgccaat 363
Query: 298 ggatcaggagtaagtggtaaggttccacgtgtttcttcccccttcatagttgcttgttgc 357
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggatcagcagtaagtggtaaggctccacgtgtttcttcccccttcatagttgcttgttgc 303
Query: 358 aaactcagtgaaagggtgcacagttgctgctagttcctgcttgccatgaccactgcatgc 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaactcagtgaaaggatgcacagttgctgctagttcctgcttgccatgaccactgcatgc 243
Query: 418 ctagaagatggaatatatatatatgcgtgggtgtgtgtgtgt 459
|||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 242 ctagaagatggaatatatatatatatgtgtgtgtgtgtgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 859
Length adjustment: 10
Effective length of query: 451
Effective length of database: 849
Effective search space: 382899
Effective search space used: 382899
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_e10.g1 MSMg01no146_e10.g1 CHROMAT_FILE:
MSMg01no146_e10.g1 PHD_FILE: MSMg01no146_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:51 2005
(209 letters)
>mm_chr12_56934393_56935001
Length = 609
Score = 315 bits (163), Expect = 1e-90
Identities = 198/217 (91%), Gaps = 13/217 (5%)
Strand = Plus / Plus
Query: 1 ctggcctggtccccacatggattctggtgtgaggactccagtcgtcatacttttgcagca 60
||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ctggcctggtctttacatgaattctggtgtgaggactccagttgtcatacttttgcagca 260
Query: 61 agactttacctgctgagttatcttatgagcctatgacaagagtctgagactttgaaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactttacctgctgagttatcttatgagcctatgacaagagtctgagactttgaaagga 320
Query: 121 atttaaagttaagatcatagaaacttcttattttataactgacctgcgattcttcggggt 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 321 atttaaagttaagatcatagaaacttcttattttataactgaccagcgattcttcg---t 377
Query: 181 tttttt----------gggggggggggttcgagacag 207
|||||| |||||||||||||||||||||
Sbjct: 378 ttttttttttttttttgggggggggggttcgagacag 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space: 120000
Effective search space used: 120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
