BAC Information

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BAC

Clone NameMSMg01-147N07
Chromosome12 (Build37)
Map Location 110,551,348 - 110,551,967
singlet/doubletsinglet
Overlap genenone
Upstream gene1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194
Downstream geneDlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147N07.T7 (MSMg01no147_n07.b1)MSMg01-147N07.TJ (MSMg01no147_n07.g1)
ACCAG351006AG351007
length714721
length of high quality
(start - end)
626 (43 - 668)289 (431 - 719)
definitionCHROMAT_FILE: MSMg01no147_n07.b1 PHD_FILE: MSMg01no147_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:32 2005CHROMAT_FILE: MSMg01no147_n07.g1 PHD_FILE: MSMg01no147_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGA
ATTCCTCAGTTGCTTGGTCAACTACTCTGTAGATTCTATAGATATCTGTT
AAATTCATTTAGTTGATGACATAGTTTAACCCTAAGATTTTAGTTGATGC
TCATCTGGTCTGGGTTATCTATTTATTAATGAGAGCATTAAAGTCACTTG
ATATTACTGTATCTTGGTGTATCTTTCCCTTTATGTCTCAGTATTTCTTT
TATTAAATAGGATGGACCAATATTTGGTCCACGTATGGACTTAGAATTGT
TACATCCTTTTCAGGTTGCTCCTTCTATGGATAAGAAGTGACCTTTTTAA
AAATCTTTTGATTAAATTGGCTTGAAATAGCTACACCTACTTGTTTTTTT
ATTCCATTCGCCCGCAATATCATTTTCCATTCTATGCTTTGAGTCTTTCT
GTGTCTTCACCAGTGAGGTGAGTTTCTTGCAGACAGCAAAGAGTTGGATG
TTGTGTTTTCCCCCCATTATAAATCATTTAATTGGAGAGTTAAGACTCTT
TACATTTGGAGTTATTGAAAGTTATATATTAATACATCATTATTCATATT
AGAGATTCACTGAATGAATGAATGAATTCTTGTTCCTGTCCTAACTCTTA
ATATTTTAATCAATTCTTTTGTAACATTTATTCTTTCCTGAGCTCTTGCA
ATTGCGAATATCTA
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTGGCACTGGAGGTTTC
ATTTAGAAGGGAGAGATGTCTAATTCATGCTTGGTACTGAGAGATCCCCT
CATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAG
GGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCC
GCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTG
ACTGTGTTAGCCTGGAAGTGGTTGTCCCAACCTTGTTTCTGAGCATGAAC
GCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGA
TATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCG
TAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTT
CGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGT
TAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGT
GACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTT
AGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAG
TCAGCCTCTTATAGCCTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_n07.b1 MSMg01no147_n07.b1 CHROMAT_FILE:
MSMg01no147_n07.b1 PHD_FILE: MSMg01no147_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:32 2005
         (626 letters)



>mm_chr12_110551142_110552167
          Length = 1026

 Score = 1106 bits (572), Expect = 0.0
 Identities = 608/620 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcctcagttgcttggtcaactactctgtagattctatagatatctgttaaattcat 66
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcctcagctgtttggtcaactactctgtagattctatagatatctgttaaattcat 266

                                                                       
Query: 67  ttagttgatgacatagtttaaccctaagattttagttgatgctcatctggtctgggttat 126
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 267 ttagttgatgacatagtttaaccctaaggttttagttgatgctcatctggtctgggttat 326

                                                                       
Query: 127 ctatttattaatgagagcattaaagtcacttgatattactgtatcttggtgtatctttcc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctatttattaatgagagcattaaagtcacttgatattactgtatcttggtgtatctttcc 386

                                                                       
Query: 187 ctttatgtctcagtatttcttttattaaataggatggaccaatatttggtccacgtatgg 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 387 ctttatgtctcagtatttcttttattaaataggatggaccaatatttggtccacatatgg 446

                                                                       
Query: 247 acttagaattgttacatccttttcaggttgctccttctatggataagaagtgaccttttt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 447 acttagaattgttacatccttttcaggttgctccttctatggataagaagtgacctttta 506

                                                                       
Query: 307 aaaaatcttttgattaaattggcttgaaatagctacacctacttgtttttttattccatt 366
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaaaatctttcgattaaattggcttgaaatagctacacctacttgtttttttattccatt 566

                                                                       
Query: 367 cgcccgcaatatcattttccattctatgctttgagtctttctgtgtcttcaccagtgagg 426
           |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cgcttgtaatatcattttccattctatgctttgagtctttctgtgtcttcaccagtgagg 626

                                                                       
Query: 427 tgagtttcttgcagacagcaaagagttggatgttgtgttttccccccattataaatcatt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgagtttcttgcagacagcaaagagttggatgttgtgttttccccccattataaatcatt 686

                                                                       
Query: 487 taattggagagttaagactctttacatttggagttattgaaagttatatattaatacatc 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 taattggagagttaagactctttacatttggagttattgaaagttatatattaatacatc 746

                                                                       
Query: 547 attattcatattagagattcactgaatgaatgaatgaattcttgttcctgtcctaactct 606
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 747 attattcatattagagatccactgactgaatgaatgaattcttgttcctgtcctaactct 806

                               
Query: 607 taatattttaatcaattctt 626
           | ||||||||||||||||||
Sbjct: 807 tgatattttaatcaattctt 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)