BAC Information

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BAC

Clone NameMSMg01-148H13
Chromosome12 (Build37)
Map Location 58,745,883 - 58,746,134
singlet/doubletsinglet
Overlap genenone
Upstream genePax9, Slc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600
Downstream geneBC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148H13.T7 (MSMg01no148_h13.b1)MSMg01-148H13.TJ (MSMg01no148_h13.g1)
ACCAG351459AG351460
length727724
length of high quality
(start - end)
336 (77 - 412)249 (70 - 318)
definitionCHROMAT_FILE: MSMg01no148_h13.b1 PHD_FILE: MSMg01no148_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:23 2005CHROMAT_FILE: MSMg01no148_h13.g1 PHD_FILE: MSMg01no148_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGAATCCGCGG
AATTCACTGTTTTTACAGCTGAGTAGTATTCTATTGTATAAATGTACCAC
ATTTTCTGTATCCATTCCTCTGTTGAGGAACATCTGGGTTCTTTCCAGCT
TCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCGCGTGTCCT
TATTACATGTTGGAGCATCTTCTGGGTATATGCCCAGGATTGATATTTCT
GGGTCCTCAGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGA
CTTCCAGAGAGATTGTACCCACTTGCAATCCCACCAGCAATGGAGGAGTG
TTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGTCACCTGAGTTTTTT
ATCTTAGCCATTCCCACCCCCGCGAGGTGGAATCTCAGGGTTGTTTTGAT
TTGCATTTCCCTGATGACTAAATGTTGTGTCTGGCCAGTAGATCACAACA
TGGGTTTTAGCCTGGAAAGGTATTTTGGAAACCTGGAAGAGAAGAGGGGC
TGGGCTGTGTGATATAAGGAAGGAACCAAGACAAAGCTCTCTGCTCAAGG
TTCTAGGATGTTGAACATTTCTTTAGGCGCTTCTCAGGCAGATGGAATTC
CTCAGTTAAGAATTCTTTGTTTATCTCTGTACCCCATTTTTTTACTATGG
TTATTTGCCTCTCTGGAATCTAACTTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCAGAAATTCCCATGTGGTTTCAACTGACAACATAAACAG
AGAATCTACTTGCTACTCCACTAGGATGGATGACTCTAGCTTTCTTCACT
GTTTTTTACTGTGGCAAAATGGATGAAAAAAGCAACTTCTCAGCTTTGAA
AATAAGATTGAAAAATTATCTTTTTGGCTCTTGGTTTCAGAGAATTCGAC
CCACACCAGACTACCTCTACCACTGTGGCCAGGAGCTGGCACAACAAAGC
TACTGACTCATGGAAGCCATTATGCAGAGAGGCTGAAAAAGGGAGAAGCC
AGAGATGAGCAATGCCCTTTAAAGATGCATCCTGTTTCCCTGCTCCTTTC
TTCCCAGTCCACGCCCTTCCACAGAGTCTGCCACGTGCCACCCATACATT
TAAGTAGAACCCTGTGTCCGTGGATTAGATCAGAGCACTCACAACCCAAT
CATTTTCCCAAAGCCCCACACTTCAACTTTGCATTGGAAATCAAGTCGTC
AAACCATAAGCCTTCAGCAAACATTTTATATCCAAACCACAATACTGCTC
CATACTCAGCCCACCTTCACAACAATCTGACAAGGACCCTGGCATGTTTT
GAGACAGTCTGGCAAGGACTAGACCTTTCCTGGTGAAGGCCAGGAGTAGA
AGCATACTGTCTTCCTGCAGTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_h13.g1 MSMg01no148_h13.g1 CHROMAT_FILE:
MSMg01no148_h13.g1 PHD_FILE: MSMg01no148_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:23 2005
         (249 letters)



>mm_chr12_58745683_58746334
          Length = 652

 Score =  472 bits (244), Expect = e-138
 Identities = 249/252 (98%), Gaps = 3/252 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccatgtggtttcaactgacaacataaacagagaatctacttgctactccactaggatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cccatgtggtttcaactgacaacataaacagagaatctacttgctactccactaggatgg 393

                                                                       
Query: 61  atgactctagctttcttcactgttttttactgtggcaaaatggatgaaaaaagcaacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgactctagctttcttcactgttttttactgtggcaaaatggatgaaaaaagcaacttc 333

                                                                       
Query: 121 tcagctttgaa---aataagattgaaaaattatctttttggctcttggtttcagagaatt 177
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcagctttgaaaataataagattgaaaaattatctttttggctcttggtttcagagaatt 273

                                                                       
Query: 178 cgacccacaccagactacctctaccactgtggccaggagctggcacaacaaagctactga 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cgacccacaccagactacctctaccactgtggccaggagctggcacaacaaagctactga 213

                       
Query: 238 ctcatggaagcc 249
           ||||||||||||
Sbjct: 212 ctcatggaagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 652
Length adjustment: 9
Effective length of query: 240
Effective length of database: 643
Effective search space:   154320
Effective search space used:   154320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)