BAC Information

Click to search

BAC

Clone NameMSMg01-149A03
Chromosome12 (Build37)
Map Location 109,037,394 - 109,037,856
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
Downstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164, Yy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149A03.T7 (MSMg01no149_a03.b1)MSMg01-149A03.TJ (MSMg01no149_a03.g1)
ACCAG351846AG351847
length714793
length of high quality
(start - end)
463 (73 - 535)---
definitionCHROMAT_FILE: MSMg01no149_a03.b1 PHD_FILE: MSMg01no149_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:06 2005CHROMAT_FILE: MSMg01no149_a03.g1 PHD_FILE: MSMg01no149_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAACGCGG
AATTCCAGAGAGAGTCTCCTGATCATGAGGCCTTCGCCAGCTCAGAGTTC
CTCTGAAATTCTTAAGTGCGGCTTTGTGATGAGTTAGCAAAGACAAAGAC
TCGCTCAAATGAGAACTGAAGCATCAGGGAACAGACAGAAAGCAGACAGG
CCAGAGCTGCTCCCCAGGGGGCTTAAATGAAGGGTGCCTCTGTTTTCAGC
AAGGTGGCATCAGAAGCACCAACCTCCGATAACCTTGTCAGTTATCCTGG
TATATCAACCCACTGTGTGCACAACTGTATTCGAGTTCCTTCAAACCCTG
AGCCAGGGAGCTTCCTAGGAAAACATCGTTAGCTGGCCGTTGGTATCAGA
CTCTGGCATCTAAGGTGATGCATACAAATGAGCTGTCCCCTTAAGAATGT
GGTTTCAATTAAACTGAGGTCTATCCAGGTTCCCAACACGTTCCGCAGGT
TGTTCTGGCTAACCTTTTGGAAATCTCCACATGGTTATCATTAGTTTTTT
TCTCCCCTGGTTTGCTTTGGAACAAATGCCATGTTTATCTAATGTCACTA
AAGGGATGGATGAGGGGGCCAAGCGGGTTTCCCAGGCAGCATATCCATGG
GGCAAGATGAGATAAGAGCAGAACCGATTCTCCACCTGGGAGACATACCC
TTCGTTCTTGCCAA
CCTGCTGTGCTAGCCTGGCGCCGCCTGGCTTTTCTATTAGGTGACCTATA
GAAGGATTTTTTCTAATTCTCTGCTGATGTCACCAGAGGCTGTGTGTCAA
CCATGAGTCTTAGGGTCCACTCCGACTGTGAGTTGCCAGAGGTCGCCATC
TGGAGCCAGGTATGCATCAGAGCTCTCTTTCTTTTCTTTCTCCTTCTTTT
CTTTTCTTTTTCTTCCTCCCCTTTTTCTTTCCCTTCCCCCCCTCCCCTCT
CCTCCCCTTTTTTCCCCCCTTTCCCCTCCTTTCTCCCCCCTCCCTTCTCT
TCCTTTCTTTTTTTTTTCCCTCCTCTCCCCCCTTCTTTTTCTTTTCTTTC
CCCCTCTTCCTCCCCCCCCCCTTCCCCCCCCTCTTCCCCCCCTCCCCTCC
TTCCTCCCTCCCCATCCCTCCTCCCTCCCTCTCCTCTCTTTCTCCCCCCC
CCCCTTTTCCCTTTTTTTTTTCTCCCCCTTTTCCCTCTCCCCCCCTCCCC
TTCTCCTCCCCTTTCTCTCCCCTCCCCTCCCTCTTCTCTCTCCTTTCCCC
CTCCTCCTCCCTCTTTCCCTTTCCTCCCCTCTCTTCTCTCCTTCTTCCCT
CTCTTCCTTCCTTTTTTCTCCTCTTCCTTCTTTTTTTTTCTTCCTCCCCC
TCTTCTCCCCTTTTTTCTTCTCCCTCTCCCTTTTTCTTTTCTCCCTCCTT
TTCTCTCCCCCCCCCCCTCCTCTCTCTCCCCCCTCTCCTTTCTCTTTTCC
CTCCCCCCCCCCTCTCTCCTTTTCTCTCCCTTCTTCCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_a03.b1 MSMg01no149_a03.b1 CHROMAT_FILE:
MSMg01no149_a03.b1 PHD_FILE: MSMg01no149_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:06 2005
         (463 letters)



>mm_chr12_109037194_109038056
          Length = 863

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgaggccttcgccagctcagagttcctctgaaattcttaagtgcggctttgtgatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgaggccttcgccagctcagagttcctctgaaattcttaagtgcggctttgtgatga 260

                                                                       
Query: 61  gttagcaaagacaaagactcgctcaaatgagaactgaagcatcagggaacagacagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttagcaaagacaaagactcgctcaaatgagaactgaagcatcagggaacagacagaaag 320

                                                                       
Query: 121 cagacaggccagagctgctccccagggggcttaaatgaagggtgcctctgttttcagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagacaggccagagctgctccccagggggcttaaatgaagggtgcctctgttttcagcaa 380

                                                                       
Query: 181 ggtggcatcagaagcaccaacctccgataaccttgtcagttatcctggtatatcaaccca 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggcatcagaagcaccaacctacgataaccttgtcagttatcctggtatatcaaccca 440

                                                                       
Query: 241 ctgtgtgcacaactgtattcgagttccttcaaaccctgagccagggagcttcctaggaaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgtgcacaactgtattcgagttcctacaaaccctgagccagggagcttcctaggaaa 500

                                                                       
Query: 301 acatcgttagctggccgttggtatcagactctggcatctaaggtgatgcatacaaatgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 acatcgttagctggccgttggtatcagactctggcatctaaggtgatgcttacaaatgag 560

                                                                       
Query: 361 ctgtccccttaagaatgtggtttcaattaaactgaggtctatccaggttcccaacacgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtccccttaagaatgtggtttcaattaaactgaggtctatccaggttcccaacacgtt 620

                                                      
Query: 421 ccgcaggttgttctggctaaccttttggaaatctccacatggt 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccgcaggttgttctggctaaccttttggaaatctccacatggt 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)