BAC Information

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BAC

Clone NameMSMg01-149A20
Chromosome12 (Build37)
Map Location 90,254,552 - 90,255,047
singlet/doubletsinglet
Overlap geneNrxn3
Upstream geneLOC100039191, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149A20.T7 (MSMg01no149_a20.b1)MSMg01-149A20.TJ (MSMg01no149_a20.g1)
ACCAG351879AG351880
length705707
length of high quality
(start - end)
484 (46 - 529)611 (75 - 685)
definitionCHROMAT_FILE: MSMg01no149_a20.b1 PHD_FILE: MSMg01no149_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:10 2005CHROMAT_FILE: MSMg01no149_a20.g1 PHD_FILE: MSMg01no149_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCTGCCCCATCTACATAACAGAGAAATCCCGTTTCACATTAA
ACAAAACCAAAAAAAAAAAAAAACCCAAAAAACAAAAACAAAACAAAAAA
ATCTGTGTGAAAATTATCGCAAACACACATGCACATGTGTGCATATATAC
ATGTCATGTCTTATTTTTGTTAATGGAAGTTATATTGGTAATGAGTTAAA
TTAGAAAGTATATTAATTGACAATAGCTGTGTAACAAAGCTCTCCCAAAT
TCAATGGCTTAAAACAACCAGCAATCTATGATTTCTCCTGAGTCTGGAGT
TGCTTGAAGGACTTGCTGATGTGGTCTGGAGCACAGTGGGCCTTATGAGC
ATCTGTGCTCAGCGACAGATGGAATACTTGGCTTTGCTGATCTTAGCTAG
ACTGCTTTTCAGAGCTTTAGTTTAAATGGCTTAGCTTTGCTCCATACATT
CTCCAGCAGTTTAACAGGAGCTTGCTTTTATAGTAGCCTTGGATGTTGCT
ATGGTGATGAGAAGCAGAGAACTGGCCATGTGTAAGGACACTTGACACCT
AGAGCTGGAACTGGCATACCACCTGCATTGCTACATTCTGTTGACTGAAG
CAATCCACAGTCCAATGCAGACTCACTGGCTAGGGAGCTAGACCCTACAG
GCTAG
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGCAGTTGTCACTGCACAAGACCT
GTACGAAATTAAATCAACACTCTAGTGTGGAGTGAAAGAGTGGTTCATGA
GGCTCCACAGATATTTAAAGAATTAAGAACAGAGCCAGGAGTGGTGGCAC
ACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGT
TCGAAGCCAGCCTGGTCTACAGAGTGTGTTACAGAACAGCCAGGACCACA
CAGAGAAACTCTGTCTCCCCCCCCCCCGAACCTCCCCCCAAAATTAAAAA
CAGTTGATGACTTCTGAGTAAGGGAAAGTCAGTCTTCGGTAATGATGTAG
CTCCTGGTGGGTTAACATGCTCTAGTACACGGGCCCACCCCTAGGAGTAT
ATGGGGATGGCAAAAACTGGGTTCAATGGGTTGCTGAATAGGAAAGAGAG
AGCATGACCAAAAGGCAAGAGTGAATCTGGGAAGAGTTAAAGAGAGGACC
TGGAGTAAAATAAAATTAAAATATATCGTATGAAATTATATAAAAATTAA
TTAAAACATTTAAAATAAGTTAATAAAATAAATAAATCCCATTGAATGAC
AAATAATATATTGATAGTTTTCTTCATGTTGAATCAGTAGAGTACATACA
ATCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_a20.b1 MSMg01no149_a20.b1 CHROMAT_FILE:
MSMg01no149_a20.b1 PHD_FILE: MSMg01no149_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:10 2005
         (484 letters)



>mm_chr12_90254366_90255247
          Length = 882

 Score =  793 bits (410), Expect = 0.0
 Identities = 468/498 (93%), Gaps = 20/498 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggctgccccatctacataacagagaaatcccgtttcacattaaacaaaacc- 63
           |||||||||||||||  | ||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 187 gaattccaggctgccagagctacataacagagaaatcccgtttcacataaaacaaaacca 246

                                                                       
Query: 64  ------------aaaaaaaaaaaaaaacccaaaaaacaaaaac-aaaaca----aaaaaa 106
                       ||||||||||||||||| ||||||||||||| ||||||    ||||||
Sbjct: 247 aaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaacaaaaacaaaaacaaaacaaaaaa 306

                                                                       
Query: 107 tctgtgtgaaaattatcgcaaacacacatgcacatgtgtgcatatatacatgtcatgtct 166
           |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 307 tctgtgtgaaaattatagcaaacacacatgcacatgtgtgcatatat--atgtcatgtct 364

                                                                       
Query: 167 tatttttgttaatggaagttatattggtaatgagttaaattagaaagtatattaattgac 226
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tatttttgttaatggtagttatattggtaatgagttaaattagaaagtatattaattgac 424

                                                                       
Query: 227 aatagctgtgtaacaaagctctcccaaattcaatggcttaaaacaaccagcaatctatga 286
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aatagctgtgtaacacagctctcccaaattcaatggcttaaaacaaccagcaatctatga 484

                                                                       
Query: 287 tttctcctgagtctggagttgcttgaaggacttgctgatgtggtctggagcacagtgggc 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttctcctgagtctggagttgcttgaaggacttgctgatgtggtctggagcacagtgggc 544

                                                                       
Query: 347 cttatgagcatctgtgctcagcgacagatggaatacttggctttgctgatcttagctaga 406
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 545 cttatgagcatctgtgttcagcgacagatgggatacttggctttgctgatcttagctaga 604

                                                                       
Query: 407 ctgcttttcagagctttagtttaaatggcttagctttgctccatacattctccagcagtt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctgcttttcagagctttagtttaaatggcttagctttgctccatacattctccagcagtt 664

                             
Query: 467 taacaggagcttgctttt 484
           ||||||||||||||||||
Sbjct: 665 taacaggagcttgctttt 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 882
Length adjustment: 10
Effective length of query: 474
Effective length of database: 872
Effective search space:   413328
Effective search space used:   413328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)