BAC Information

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BAC

Clone NameMSMg01-149C12
Chromosome12 (Build37)
Map Location 43,552,081 - 43,552,396
singlet/doubletsinglet
Overlap genenone
Upstream geneImmp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149C12.T7 (MSMg01no149_c12.b1)MSMg01-149C12.TJ (MSMg01no149_c12.g1)
ACCAG351954AG351955
length700698
length of high quality
(start - end)
530 (47 - 576)542 (74 - 615)
definitionCHROMAT_FILE: MSMg01no149_c12.b1 PHD_FILE: MSMg01no149_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:19 2005CHROMAT_FILE: MSMg01no149_c12.g1 PHD_FILE: MSMg01no149_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGAGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
TGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAAACATGCTCCACTAT
GTTCATAGCAGCCTTATTTGTAATAGCCAGAAGCTAGAAAAAACACAAAT
GTCCCTCAAGCATACTGTTAAATAACTGACCTAAAATACCAATTTTATTT
AGACCCCAAATTATTATTTGTACCATGACAAAAGTTGAAAGCACTGTCTG
ATACTGTTTTTTTTTTTTTTTCACCTTCTGCCCCTACCAAAATTTTGTGT
CTTTTGAAATTAAATGTGAATATTGACTTTGCTATAAGCCCTAATATTTA
CTTTCTTGCCATAGATGGATAAAAACCCCCTGACCTTTAAATTCAGTTGT

CCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCCTGGATATGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGAAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACCCAATATGTACTCACTGATAAGTG
GATATTAGCCCCAAACCCAGGATATCCCAGATATAAGATACAATTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_c12.b1 MSMg01no149_c12.b1 CHROMAT_FILE:
MSMg01no149_c12.b1 PHD_FILE: MSMg01no149_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:19 2005
         (530 letters)



>mm_chr12_43551468_43552397
          Length = 930

 Score =  522 bits (270), Expect = e-152
 Identities = 305/318 (95%), Gaps = 4/318 (1%)
 Strand = Plus / Minus

                                                                       
Query: 207 attgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggaca 266
           |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 929 attgcaagcttgtgcaaccactctggaaatcagtctggcagttcctcagaaaattggaca 870

                                                                       
Query: 267 tagtactaccggaggatccagc--aatacctctcctgggcatatatccagaagatgcccc 324
           |||||||||| ||||||||  |  |||| |||||||||||||||||||||||||||  ||
Sbjct: 869 tagtactaccagaggatcc--cataatatctctcctgggcatatatccagaagatgttcc 812

                                                                       
Query: 325 aactggtaagaaggaaacatgctccactatgttcatagcagccttatttgtaatagccag 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aactggtaagaaggaaacatgctccactatgttcatagcagccttatttgtaatagccag 752

                                                                       
Query: 385 aagctagaaaaaacacaaatgtccctcaagcatactgttaaataactgacctaaaatacc 444
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 751 aagttagaaaaaacacaaatgtccctcaagcatattgttaaataactgacctaaaatacc 692

                                                                       
Query: 445 aattttatttagaccccaaattattatttgtaccatgacaaaagttgaaagcactgtctg 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aattttatttagaccccaaattattatttgtaccatgacaaaagttgaaagcactgtctg 632

                             
Query: 505 atactgtttttttttttt 522
           ||||||||||||||||||
Sbjct: 631 atactgtttttttttttt 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)