Query= MSMg01no149_c15.b1 MSMg01no149_c15.b1 CHROMAT_FILE:
MSMg01no149_c15.b1 PHD_FILE: MSMg01no149_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:20 2005
(638 letters)
>mm_chr12_93376335_93377369
Length = 1035
Score = 969 bits (501), Expect = 0.0
Identities = 550/573 (95%), Gaps = 12/573 (2%)
Strand = Plus / Minus
Query: 8 ttctacatgatatcctggcagatggagaaaaggtggcagatgctattgttttagtagtag 67
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 570 ttctacatgatatggtggcagatggagaaaaggtggcagatgctattgttt---tagtag 514
Query: 68 agtatgatgaacatataatcatatagaaaaagatgaaggtgaggagtagtacctgggttt 127
| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 513 aatatgatgaacatataatcatatagaaagaggtgaaggtgaggagtagtacctgggttt 454
Query: 128 taactatccaaaagaagtattatagaaaagggggttcttagtgctgtaaagagaatgtca 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 453 taactatccaaaagaagtattatagaaaagggggttcttagtgctgtaaagagagtgtca 394
Query: 188 aatgagcacagactcaactctaaaagaatttatgagtctattagagcctctacggctcca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aatgagcacagactcaactctaaaagaatttatgagtctattagagcctctacggctcca 334
Query: 248 atcagacttcgccgaatgtcatgccaaggataaaagggaatatttgctgacatctttaat 307
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 333 aacagacttcgccgaatgtcatgccaaggacaaaagggaatatttgctgacatctttaat 274
Query: 308 tcaactaaaaccccaaactgctcatttataatgtggctataatctgtgtttagggggtga 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcaactaaaaccccaaactgctcatttataatgtggctataatctgtgtttagggggtga 214
Query: 368 ccatagctag---------gagctgaacatgtagaaaacacagaagacattaccaagtca 418
|||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 213 ccatagttagtaatgaaaggagctgaacttgtagaaaacacagaagacattaccaagtca 154
Query: 419 ctagatagttatctggtgtttatttatcatgtgggggcgatgtgatgtgtaaattaaagc 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 153 ctagatagttatctggtgtttatttatcatatgggggcgatgtgatgtgtaaattaaagc 94
Query: 479 tcaccagaaacttcacccagaatatcagagagatgtatttagcttagaggactttttgtt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 tcaccagaaacttcacccagaatatcagagagatgtatttagcttagaggactttttgtt 34
Query: 539 cttaattcttttcaagggaaaaaataaggttct 571
|||||||||||||||||||||||||||||||||
Sbjct: 33 cttaattcttttcaagggaaaaaataaggttct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1035
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1025
Effective search space: 643700
Effective search space used: 643700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_c15.g1 MSMg01no149_c15.g1 CHROMAT_FILE:
MSMg01no149_c15.g1 PHD_FILE: MSMg01no149_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:20 2005
(533 letters)
>mm_chr12_93239187_93240119
Length = 933
Score = 872 bits (451), Expect = 0.0
Identities = 499/527 (94%), Gaps = 20/527 (3%)
Strand = Plus / Plus
Query: 7 gagcatgcagaaccttggctttgtaattactttaaacattaaattatattctgaatctta 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gagcatgcagaaccttggctttgtaattactttaaacattaaattatattctgaatctta 286
Query: 67 gtctagcataataagttggaggcatattaataatatacatgtatatattcatatatgtag 126
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 287 gtctagcataataagttggaggcatattaataatatacatgtatatattaatatatgtag 346
Query: 127 atgtgtatatgtgtgggtatatatgtatacatatatgaatatatattaaacacacacaca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atgtgtatatgtgtgggtatatatgtatacatatatgaatatatattaaacacacacaca 406
Query: 187 cacacacacatacacacacacacacacacacacacacacacacacacacacacacacata 246
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 407 cacac------acacacacacacacacacacacacacacacacaca-------------- 446
Query: 247 tttcttttttcccaggtagatgttctcgtttatttatagtcccatgttttcaaagaaaaa 306
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttcaattttcccaggtagatgttctcgtttatttatagtcccatgttttcaaagaaaaa 506
Query: 307 ttttcattaaaatttccatttcatcagttagaggcagtgccgcagaacatagattgttcc 366
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 507 ttttcattaaaatttccatttcatcagttagaggcagtggtgcagaacatagattgttcc 566
Query: 367 tttgatgaactgttagctgtatttctacttataaaagcctttaatgtgaatgtgaatagg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tttgatgaactgttagctgtatttctacttataaaagcctttaatgtgaatgtgaatagg 626
Query: 427 acgctaggtgacctatcacatttccatgactgtggtccacaggtggtggatggtgaacag 486
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 627 acgctaggtgacctatcacatttccttgactgtggtccacaggtggtggatgatgaacag 686
Query: 487 tatgcttcagtattaaagtacagttcctttggttcccaaggttgtac 533
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 687 tatgcttcagtattaaagtacagttcctttggttcccaaggatgtac 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
