BAC Information

Click to search

BAC

Clone NameMSMg01-149F20
Chromosome12 (Build37)
Map Location 108,143,231 - 108,143,521
singlet/doubletsinglet
Overlap genenone
Upstream geneVrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604
Downstream geneLOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149F20.T7 (MSMg01no149_f20.b1)MSMg01-149F20.TJ (MSMg01no149_f20.g1)
ACCAG352101AG352102
length725724
length of high quality
(start - end)
293 (67 - 359)364 (72 - 435)
definitionCHROMAT_FILE: MSMg01no149_f20.b1 PHD_FILE: MSMg01no149_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:36 2005CHROMAT_FILE: MSMg01no149_f20.g1 PHD_FILE: MSMg01no149_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAAGGATCCGCGGAATTC
CAGGATTTTCGATAGACACTGCTTCCTCCAGGATTTGTTTTCATTAGAGC
ACTGGACTCTGAGGTCAGCTTGAGATTCGTATGTCCTTGCTTCTGCTCAG
CTGGGTTCTTAGTGTAAGATCTCTTAAGCTCACAGCTCCACAGTTCACAG
CCCCCTCCATGCACTGATCCAAACTCCCTACCAGACAGCAAAACCCAGCA
AACCTGAAAGACTGGGTAGGTACAGCTCCTGGTGTTGGAGGCCAGCAGCT
ATACACAGGAGCTGTTCCAAATGAAAGTCTCCTCTGGTTCCCTAAGAGGA
CCACAAATAAAAGAGAATATCAGAGCGCAGGCTTGTGGAAGGAAACATTT
TGTAACCACCAATACAAGTATGGGCTCTCAGGTCTTATGAGAGACTCCAC
AGTGCCTGGGAGTGCCTGTCCTGGTTCTAGAGTGTGTCACTGGCGAAGCA
GTGGGGACAAGCACTGAGTGCTCTTGTGTCTTATCCAGACAGCAGCTTGA
CCAAGGTGCATCTGACAAACAATCTTTGCTTTACGCTGAATTAATTATTT
TTTTACAAACGAGTTAACCACTGCCCTCATGTCCCGTTACGCGCCTCGAA
CCTCAAGTTCTGCAAGCTGCAAATAGTGGCCTCTCTACTTGAGCTTCACG
AATACTATACGTATGGGGACTTCGT
AATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGAGGTAGAGGACCTCTGTATCAATCTGT
TGGGTCCATCTCTATGGACATTCCCTTACCAGGGTGTTGGGGCTGGAAAC
TTGCTGGGGAGGTCTGGAAACTGTTGCTGAGGAAGTCTGGAAACTGCTGC
TGACCTATTTTCCTTGCCTCAGGCCAGGTGGCAGGAAAGCTTCTGAGGCC
TGTAATTGCCCAGTTCTTGGAAACAGAGATTTGGGCATAGTCTCTTAACT
GCCCATTTGAAGCTTGTCATGGACTCAGCCTGGCCTTCTCAGGTTCTGTT
GACTTGATTTCCTCATGATCGCCTTTATGACTAGGGAGAGATGGAGTCTG
ACAACAGTTGGAAGTTGCATTTCCATGATGTCTCATGGCATTGAATACTT
ATGGAAGTGTTCATTGTGCTTTTGCCTTTCTTCTGCTGAGAATTCTCTGT
TCAGATCGGTCATCTGCTTTCTTGACGCTCAGACTTTCCTGTTCTTTGTG
TATTCTAGACACTGGTTCTCTGTCAGATGCATAGTCGACGACCATTTCCT
CCCATTCCGTGGCCTTCCCCTTCCCTTAATGGATCATTTCATCAGCTATA
CAGATGCTTTGCTTATTTCCTGACTCCCATTCGCCATACCGCTGGTTTTA
TCCCCCGCACTACCGGCGCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_f20.b1 MSMg01no149_f20.b1 CHROMAT_FILE:
MSMg01no149_f20.b1 PHD_FILE: MSMg01no149_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:36 2005
         (293 letters)



>mm_chr12_108143031_108143723
          Length = 693

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgcttcctccaggatttgttttcattagagcactggactctgaggtcagcttgagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgcttcctccaggatttgttttcattagagcactggactctgaggtcagcttgagat 260

                                                                       
Query: 61  tcgtatgtccttgcttctgctcagctgggttcttagtgtaagatctcttaagctcacagc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgtatgtcctttcttctgctcagctgggttcttagtgtaagatctcttaagctcacagc 320

                                                                       
Query: 121 tccacagttcacagccccctccatgcactgatccaaactccctaccagacagcaaaaccc 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tccacagttcacagccccctccatgcactgatccagactccctaccagacagcaaaaccc 380

                                                                       
Query: 181 agcaaacctgaaagactgggtaggtacagctcctggtgttggaggccagcagctatacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 agcaaacctgaaagactgggtaggtacagctcctggtgttggaggccagcagctacacac 440

                                                              
Query: 241 aggagctgttccaaatgaaagtctcctctggttccctaagaggaccacaaa 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagctgttccaaatgaaagtctcctctggttccctaagaggaccacaaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)