BAC Information

Click to search

BAC

Clone NameMSMg01-149I07
Chromosome12 (Build37)
Map Location 115,448,097 - 115,448,421
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIgh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438
Downstream geneIghv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149I07.T7 (MSMg01no149_i07.b1)MSMg01-149I07.TJ (MSMg01no149_i07.g1)
ACCAG352215AG352216
length702701
length of high quality
(start - end)
377 (74 - 450)368 (71 - 438)
definitionCHROMAT_FILE: MSMg01no149_i07.b1 PHD_FILE: MSMg01no149_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:49 2005CHROMAT_FILE: MSMg01no149_i07.g1 PHD_FILE: MSMg01no149_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGGCTATTACACTAGGTGAAACTAGGAAAGGAGATAACATT
TAAATGAATATAAAGAAAATATCTAATAAAAAATCATCCAATATAGTTTA
AAAAAGAAAGAAATTTACTGTTATTTATTCAATGATAATTTATACAAATA
CTCTTTTTTAATTCATCATTCCATTTGTTTGAATCTCAAATGATCTGCAA
GTCCCTGGTTATCCTTCACAAACCATGCATACCACATCTGCCTTCCCCCA
TTTTCCTATATGTGGGTGTTCCCTCCATCTATCCACACTAATCTCACCCT
ACCATTCCAGCACCCCCTTACAGTGAGTCATCAAATCTGCACAGGTACAA
GAGTCTCCCCTCCCTCTGATATCACACAAGACTATGCTCTGCTACATAAG
TAACTGGAGCCACGGATCTCTCATTGCACTCTAGTCCAGGGAATACTGGG
TAGAATGCCCTGCTAACATTATTCTTCTTCCAACTATAAAATACCGGTGA
TCACCTGCCAGCATACACTTTTTTGAAGTGTGTGTTATTTGTCTGAAAAT
ACTTATCATTGTTGTGAGGCACGTAAATCGAATCTACTGCACGCAGGATT
TGTTTGTGTACATCTGCTGTCTATGGTAGCCCAATTTTCCTACCCTGCCT
GT
CTCATGCAGTGATAGCCTGGCGCCGCCTGGCTTTTCAAAAAAGGTGAACT
ATAGAAGGATTTGTCTCAATTCCTAAGGGGCTGCAGCCACCATCATACCT
AAGCCCAAGGAACCCATTGCTAATTTACTAGGAAACTACAAATGATTGTG
GCAAAAGTATTAAAATAACTAGAAAGAAATGCTTCACTTAGATGTCTCTC
TGTCTCTGCCTCTGCCTCTTTCTGTCTCTCTTTCTCACAAACACACCACA
CACACACAGGCAGACACACACACACACACACAGAAACACACACACACTAA
CACCATGAAAATAACAGGACCTAATATTCATTGGTCATGATTATTTTTCA
ACATCAGTTTTCACAATTAACCAATAAAAATGACACAGGTTAACAGAGTG
GATGCATAAAGGATATACTTCATTCTGCTGCATATAAGAAACATACCTCG
GTAACTATGATAAACTATACTTCATAATAAAGTTTTTTTTTCTCTTACGG
AGAAGAACTAGGAAACTGTTCTCTTTACCAGGAGAAGGTCATTACTGATC
AAAGACATTACAAATACCGTTGCGGAATAATGACAGTGGTGAAATTGTGT
TGAGAAGGTAAAGGTGAGGTCATGCCCAGATTTGCTTCTCTTTTTGAACC
CCACAGTCCTTTATTTTCTTATGCTCTAGACTTACACTATAGGAAAGCCA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_i07.g1 MSMg01no149_i07.g1 CHROMAT_FILE:
MSMg01no149_i07.g1 PHD_FILE: MSMg01no149_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:49 2005
         (368 letters)



>mm_chr12_115448096_115448863
          Length = 768

 Score =  571 bits (295), Expect = e-167
 Identities = 315/327 (96%), Gaps = 10/327 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctaaggggctgcagccaccatcatacctaagcccaaggaacccattgctaatttacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcctaaggggctgcagccaccatcatacctaagcccaaggaacccattgctaatttacta 267

                                                                       
Query: 61  ggaaactacaaatgattgtggcaaaagtattaaaataactagaaagaaatgcttcactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 266 ggaaactacaaatgattgtggcaaaagtattaaaataactagaaagaaatgcttcacgta 207

                                                                       
Query: 121 gatgtctctctgtctctgcctctgcctctttctgtctctctttctcacaaacacaccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gatgtctctctgtctctgcctctgcctctttctgtctctctttctcacaaacacaccaca 147

                                                                       
Query: 181 cacacacaggcagacacacacacacacacaca--------gaaacacacacacactaaca 232
           ||||||||||||||||||||||||||||||||        |||||||||||||  |||||
Sbjct: 146 cacacacaggcagacacacacacacacacacacacacacagaaacacacacac--taaca 89

                                                                       
Query: 233 ccatgaaaataacaggacctaatattcattggtcatgattatttttcaacatcagttttc 292
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 88  ccatgaaaataacaggacctaacattcattggtcatgattatttttcaacatcagttttc 29

                                      
Query: 293 acaattaaccaataaaaatgacacagg 319
           |||||||||||||||||||||||||||
Sbjct: 28  acaattaaccaataaaaatgacacagg 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)