ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAT
TCCCATCCCATCATCCTGAAAGCACGGTTCTGTGCCCGCTCCTCTCTAAC
AAAGAAAGTAATTTCAACTTCTCTTTAAGCAGTAGTCAAACGCCTCCGTT
CTGTTTTCCCACGGGGAGTTCTTTAAAGCACTGATTATGTACAATAGGAC
TTAGCTTATCAGAGCCAATAGCAATGATTTGACAAGAGGCAATTTATAAA
AACCGTTTTCGTGATAAGAATTTCCCCAGAAACTCTTTTCCAAGAGAAAG
AGTTAGAGCCTCTCAACACAGAAAGGTGGTGACACTGCGAAGAACCTGCC
TGGGCGTTTGAGCTTTGGTGCACCACAGCTCTGAGGAGACCATTTCCAAA
GGGCCACCAGCAGACGTCCAGCTTCTAATCTTTAGTGAGGCAAGGTTACC
AGGATCTTACCCTCCTGGACTCAGAAAGGATGCTGTCCACGGACCATCCA
AACCCAGGCATACCACAGAACAGAAACTTCATCTAGCTCAATGATGACTT
TTCTTTCCGAGGACATGGCTAAGTTATGGTGTTTGTAATATTGCCAACAA
AATCCAATCACCATTAGGTTAAGTGTATTTTAGAGTATATATGTTAGCAG
TACTCATTAAAACTGTATTTGTGTATTATGAGTACTCATTGAATGATTGA
A

TCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGCTATACTTGCAGACAGGTACCTAG
CACAGCTGTCATCAGAGGCTTTACTTAGCATCTGATGGAAACTGATGCAG
AGATCCACAGCCAAACTTAAGTGGAGCTTTAGGGAATCCTGTGGAAGAGA
GGAACTGTTACATATGTAACAGTTGTGCAGCTGGGTCTTCATGTGGGACT
CCTAAAGTGCGAGCAGGGTCTGTGTCTGACTATATTGGTTGCCTTTGGAT
TCCTTTCCCCTAACTGGGCTGCCTCATCTCTAGTTCAATAGAAGATGCAC
CTGGTCTTCCTGCAACTTGATATGCCAAGGCTGGTTGACATCCAAGGGAG
GCCTCCTCTTTTCTGAGGAGAAGGGGAAGAGGGGTGGGTGTTGGGGAGCC
TTCCCCCTTTTTTTTCTTTTTTTCTTCCTCTTTCTTCCTTCTCCCCCTTT
CCTTTCCTTTCTCTTCCTCCCCACCTTTTTTCCCCTCCTCCTTCTTTCCC
CTCTTTTTCCCTTTTCCCCCTTTTTCCTCTTTTCCTACCCTCCTCCTTTT
CTTCTTTTCTCCCTCTTTTACCCTTTTCCCTTTTTTCCCTCTTTTTTCCC
TTTTTCTACTATTCCTACTATTATTCTTCTTATTTTCCCCCTTTTCCCCC
TTATCTTTCTCCCCCTCA

Query= MSMg01no149_k04.b1 MSMg01no149_k04.b1 CHROMAT_FILE:
MSMg01no149_k04.b1 PHD_FILE: MSMg01no149_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:58 2005
         (565 letters)



>mm_chr12_78828885_78829848
          Length = 964

 Score = 1029 bits (532), Expect = 0.0
 Identities = 553/560 (98%), Gaps = 1/560 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   attcccatcccatcatcctgaaagcacggttctgtgcccgctcctctctaacaaagaaag 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 attcccatcccattatcctgaaagcacggttctgtgcccgctcctctctaacaaagaaag 265

                                                                       
Query: 66  taatttcaacttctctttaagcagtagtcaaacgcctccgttctgttttcccacggggag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taatttcaacttctctttaagcagtagtcaaacgcctccgttctgttttcccacggggag 325

                                                                       
Query: 126 ttctttaaagcactgattatgtacaataggacttagcttatcagagccaatagcaatgat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttctttaaagcactgattatgtacaataggacttagcttatcagagccaatagcaatgat 385

                                                                       
Query: 186 ttgacaagaggcaatttataaaaaccgttttcgtgataagaatttccccagaaactcttt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttgacaagaggcaatttataaaaaccgttttcgtgataagaatttccccagaaactcttt 445

                                                                       
Query: 246 tccaagagaaagagttagagcctctcaacacagaaaggtggtgacactgcgaagaacctg 305
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 tccaagagaaagagttagagcctctcaacacagaaaggtggtgacactgccaagaacctg 505

                                                                       
Query: 306 cctgggcgtttgagctttggtgcaccacagctctgaggagaccatttccaaagggccacc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cctgggcgtttgagctttggtgcaccacagctctgaggagaccatttccaaagggccacc 565

                                                                       
Query: 366 agcagacgtccagcttctaatctttagtgaggcaaggttaccaggatcttaccctcctgg 425
           ||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 566 agcagacatccagcttctaatccctagtgaggcaaggttaccaggatcttaccctcctgg 625

                                                                       
Query: 426 actcagaaaggatgctgtccacggaccatccaaacccaggcataccacagaacagaaact 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 actcagaaaggatgctgtccacggaccatccaaacccaggcataccacagaacagaaact 685

                                                                       
Query: 486 tcatctagctcaatgatgacttttctttccgaggacatggctaagttatggtgtttgtaa 545
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 686 tcatctagctcaatgatgacttttctttccgaggacatagctaagttatggtgtttgta- 744

                               
Query: 546 tattgccaacaaaatccaat 565
           ||||||||||||||||||||
Sbjct: 745 tattgccaacaaaatccaat 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space:   529470
Effective search space used:   529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)