BAC Information

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BAC

Clone NameMSMg01-149L05
Chromosome12 (Build37)
Map Location 106,269,752 - 106,270,233
singlet/doubletsinglet
Overlap geneSnhg10
Upstream geneSerpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik
Downstream geneGlrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149L05.T7 (MSMg01no149_l05.b1)MSMg01-149L05.TJ (MSMg01no149_l05.g1)
ACCAG352348AG352349
length691701
length of high quality
(start - end)
480 (42 - 521)446 (73 - 518)
definitionCHROMAT_FILE: MSMg01no149_l05.b1 PHD_FILE: MSMg01no149_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:03 2005CHROMAT_FILE: MSMg01no149_l05.g1 PHD_FILE: MSMg01no149_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGATCCGCGGAAT
TCACTAAGATACACTCTCTTTTATTACTGTCTGTGTGCATGTGACGGGGT
GGAACTCTGGACGTCGCTTACACTAGGAAAACGACTTCCTATTGAGCTAC
ATCCTCACCCTCCGTTTTCCCTCCTTTCCTGCTGTACGGCCCGGGCTGAC
TCGGGCTTATTTAGAACTCCTGAGTTCAACTGATCCTCCTGCCTCAGCCT
CTTAAGAGGCAAGGCAACGTTGCAGACAACGGCCACAGGGCCCGGCAACC
CACCAATTCCCTTGTTCTTTCAATAAACCTTCCCGACCCCAGTAGTCACC
GAGACCCCAAAGCCAGCCGTCCCACGGCTAGAGCACTTTACACGTTTCTA
CGAGAAGAGCACCATTCTAGAGGCCAGGGAGAGGGCTCAGCGTGCCAAGG
GACTTACCCTGCAAGCTAGAGTTCCATCCCCGGACCCTTTATAAAAGTCG
TCTTCTGAAGATGCATGCACGCAGATCATACATACACAATACTTATAGTT
TTATGCTAAAAAAAAAAAACCCTCATTCTGGAGGAAGAATCCCACGGGAG
GCCGCAGGACCCGGCTTGGATGTCCATGTGCATGGCGGCTCCGAGGCTGG
AGCCCCGGGTCAGACCAGGAAACCCCTGGTTCGCGGCTGGC
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGGTA
ATAAAGGTTCCTGTAAAACAGGCTGCTGAGAAGGATTCAACAGCGTGAAT
TCAGAACTCTTCAGCTGAGGAACGGCGGTACCGGTAAGTAGAAAGAAATT
AATATGAGTCTCTGAGAAGCATGCTCTCCTAAGAAATAGGATCTCGGTAA
AGAGAAATATAGGATCTCCGGCTCTGGAGACAAGAAAGTGAAAGTAAGAG
AGAAAGTGAAAGTAAGAGGATAATAGGGACAGTCTATGGGTTACTTTCTT
TTTCTAGCCATTGGAGTAATTTTTCTGAGTCTTTTTTGTTGTTGTGGCGA
CTGTGTGGAACATGAAAGACTAGGTATGGGGTCATCACAGTCACACCCAA
TTTTTTCAGCGCTCGATGAGCTGCTAAGAGTGAAGGGCGCAAAACTATAT
CTTTTGGGTCATATTCAACCTTCTGTATCTCCATGGAATACCCAAAATTT
TGTTATCAGAAAGATATCGGGCAAATGGAGGTTGTTACAGGATCTGCAAG
CTATTAATGCACAGATGCCGGTGATGGGCTCCATTCAGAGGGGTCTGTCT
CTCTTATCTGCTCTGCCAAAAAAGTGGCCTCTAAAAGATTGTTTTTTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_l05.b1 MSMg01no149_l05.b1 CHROMAT_FILE:
MSMg01no149_l05.b1 PHD_FILE: MSMg01no149_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:03 2005
         (480 letters)



>mm_chr12_106269557_106270433
          Length = 877

 Score =  835 bits (432), Expect = 0.0
 Identities = 468/488 (95%), Gaps = 17/488 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   cggaattcactaaga---tacactctcttttattactgtctgtgtgcatgtgacggggtg 60
           |||||||||||||||   |||  |||||||||||||||||||||||||||||||||||||
Sbjct: 196 cggaattcactaagagaatac--tctcttttattactgtctgtgtgcatgtgacggggtg 253

                                                                       
Query: 61  gaactctggacgtcgcttacactaggaaaacgacttcctattgagctacatcctcaccct 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 254 gaactctggacgtcgcttacactaggaaaacgacttcctactgagctacatcctcaccct 313

                                                                       
Query: 121 ccgttttccctcctt--------tcctgctgtacggcccgggctgactcgggcttattta 172
           |||||||||||| ||        |||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccgttttccctc-ttaaaaagggtcctgctgtacggcccgggctgactcgggcttattta 372

                                                                       
Query: 173 gaactcctgagttcaactgatcctcctgcctcagcctcttaagaggcaaggcaacgttgc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaactcctgagttcaactgatcctcctgcctcagcctcttaagaggcaaggcaacgttgc 432

                                                                       
Query: 233 agacaacggccacagggcccggcaacccaccaattcccttgttctttcaataaaccttcc 292
           |||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 433 agacaatggccacagggcccggcaacccaccaattcccttgttctttcaat---ccttcc 489

                                                                       
Query: 293 cgaccccagtagtcaccgagaccccaaagccagccgtcccacggctagagcactttacac 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cgaccccagtagtcaccgagaccccaaagccagccgtcccacggctagagcactttacac 549

                                                                       
Query: 353 gtttctacgagaagagcaccattctagaggccagggagagggctcagcgtgccaagggac 412
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtttctacgagaagagcatcattctagaggccagggagagggctcagcgtgccaagggac 609

                                                                       
Query: 413 ttaccctgcaagctagagttccatccccggaccctttataaaagtcgtcttctgaagatg 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttaccctgcaagctagagttccatccccggaccctttataaaagtcgtcttctgaagatg 669

                   
Query: 473 catgcacg 480
           ||||||||
Sbjct: 670 catgcacg 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 877
Length adjustment: 10
Effective length of query: 470
Effective length of database: 867
Effective search space:   407490
Effective search space used:   407490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)