BAC Information

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BAC

Clone NameMSMg01-150D13
Chromosome12 (Build37)
Map Location 93,433,883 - 93,434,158
singlet/doubletsinglet
Overlap genenone
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425
Downstream geneLOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150D13.T7 (MSMg01no150_d13.b1)MSMg01-150D13.TJ (MSMg01no150_d13.g1)
ACCAG352719AG352720
length783766
length of high quality
(start - end)
273 (71 - 343)---
definitionCHROMAT_FILE: MSMg01no150_d13.b1 PHD_FILE: MSMg01no150_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:43 2005CHROMAT_FILE: MSMg01no150_d13.g1 PHD_FILE: MSMg01no150_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAGTACCGCGGAATTCA
AGATTTGTTTCCGATACAGACTTAGTTCAAGGTCATCCTGGGAAACATAG
TGAGAGTTTATCCTGAAAAAATGTAAAGCAAAAAGAAAAAAAAAAAGCTG
GGGATGTGATTTGGAGGGAGATGGCTCCCTAACACTAACAGAAAACAACA
AGACAAAGAAAAGAAGACTGGGCAATTCCAAGGGTGAAGAGAACAGTTAA
GTCTAACCTCTATTCAGCATGAGTCCTAAAAAGAATAATAAACTGAGATT
CCCAAGGTGATCTGACACGGCATTCCACCCCAACCTTACTGGTTCTCTGC
CATCTGGACAACAAAGATTTTGTGGGAGGGGAAGGAGGCGGATTAGGGCT
ACTTAATTCCCGTTGACCCCCCCCCCCTTACTTTATGTTGCGTATACCCA
AGTTCTTTATCTCCCCACCGCCTGACAATTAACTGAACAACCCCATCTTC
CCCCCAATGCCTCTACTGTTCCTGTCCGACTCCATACCCCAACACGCATA
TTTCCTGATATCCCTTCACCCTCCCCCCCATTTTATTTCCTTTTCCCCTT
TTGTACTACTCTCTAATTCCCCCCATATTTATCACTTTTTTTTGCGCTAC
AACCACCGACAGAAAACATTATTTCCAACCCACCCTTTATGGGACTCCTA
TCGATCGCAACAAAATTTCTACCAAGAATCTTATTGCACACCCACTCCAT
TTTATTTTGTTTTTTTTCCCCCCCATTCTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTTCGCGAAATTCTCTGACTGTGTATGAGCCCTAATTTATTTTCGCGGT
CACTCGACTTTCCGATTTCGGCGTTCTTGGACTCGCTTCTATGCTGTGAA
TTAATGACCTAGACGATTTAAGAATACGCAAGATACGTACCAACCATGAT
ATTGTGTCTTTTTGTCGAATGGACGATGTCACATAGCATTGTGTGCTCTT
GTGCCATTCATGATGACGGCTTAGGCATACACTTCTTCTCTTTCGCAGAC
TGATGAAGATGAATTTGTAATTATATCTCATGTGTCCATTATTTTCTGGA
TTATTTTTACCATTCTACCTATGCCTGTCTGAATTATATGCTATGAACTG
AAGATTCCCGCCCCCCCTAGGAATGAGCACGAAGATTCGAACCTATGACG
ATCTATTTTTGTTTCTCCCAGCCGACATCATTTAATTTAATTGCTGCCTG
TTTTTTATGCCTGACCCATTCCCTTCGTAGTGTTATCCATTTACTTTGCC
CCCTAATTACTAGGCGAATATTTAACCAATTGCCTTGTACACTACCTATG
TTAATATTAACCGGATCAACCTCCCGGTGTCTCACATCTACCATCGCCCT
CTTGCATAATTATCTAAATTCTTTATGTCTTTCCCCCTTCTATCCTTTTA
TTCCTCCTTCGTCATTTCTAATATAGGCATTTTGTCCCCTTTTTTACTCC
CCCTCCGCCCGCCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_d13.b1 MSMg01no150_d13.b1 CHROMAT_FILE:
MSMg01no150_d13.b1 PHD_FILE: MSMg01no150_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:43 2005
         (273 letters)



>mm_chr12_93433683_93434358
          Length = 676

 Score =  495 bits (256), Expect = e-144
 Identities = 270/276 (97%), Gaps = 3/276 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagttcaaggtcatcctgggaaacatagtgagagtttatcctgaaaaaatgtaaagca 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagttcaacgtcatcctgggaaacatagtgagagtttatcctgaaaaaatgtaaagca 260

                                                                       
Query: 61  aaaag---aaaaaaaaaaagctggggatgtgatttggagggagatggctccctaacacta 117
           |||||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aaaagaaaaaaaaaaaaaagctggggatgtgatttggagggagatggctgcctaacacta 320

                                                                       
Query: 118 acagaaaacaacaagacaaagaaaagaagactgggcaattccaagggtgaagagaacagt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaaaacaacaagacaaagaaaagaagactgggcaattccaagggtgaagagaacagt 380

                                                                       
Query: 178 taagtctaacctctattcagcatgagtcctaaaaagaataataaactgagattcccaagg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtctaacctctattcagcatgagtcctaaaaagaataataaactgagattcccaagg 440

                                               
Query: 238 tgatctgacacggcattccaccccaaccttactggt 273
           |||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgatctgacatggcattccaccccaaccttactggt 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 676
Length adjustment: 9
Effective length of query: 264
Effective length of database: 667
Effective search space:   176088
Effective search space used:   176088
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)