BAC Information

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BAC

Clone NameMSMg01-151D11
Chromosome12 (Build37)
Map Location 59,509,816 - 59,510,467
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151D11.T7 (MSMg01no151_d11.b1)MSMg01-151D11.TJ (MSMg01no151_d11.g1)
ACCAG353444AG353445
length716719
length of high quality
(start - end)
659 (49 - 707)641 (79 - 719)
definitionCHROMAT_FILE: MSMg01no151_d11.b1 PHD_FILE: MSMg01no151_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:58 2005CHROMAT_FILE: MSMg01no151_d11.g1 PHD_FILE: MSMg01no151_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAAGCTGCACACTAATTGAGGATGACAACATGGATCCATTT
TCTTTGTATGAGCCTGTGAGCAGTTGGCTTCTCAGGGGCCCCTATGCTGT
GAAGACACAAAAGCGAATAACTGTGGACAAGTGTAGTCGGTAGCAGGTGC
CTGTCCTGAGGGGAATGAGTGCCTAGAAGGAGGTGTGATTCAGATAAAAT
GCATGGATGACTTAAGAGGAACAAGTAGATTATAGAATTAAGATGAAAAG
CAATAAAGTAAAATGCAAACTCACAGGAAAAAATCAAGTCAATTCAGTCC
TGCTGATCATCTAAAAAGAGATGATAGGTGATCAAATAATACTGAGAGCC
CTTAATAGAAAATATATACTTACCGACAAAAAAATTAGATATTTCCAAAT
TATATTAAATCAACAAAGCTGTGTTAATCCTTTCCAGCTGTTCTTCAATA
TATCTCAGCTATACATACACAGCCTAGTATGATACGCATCATATTCATAC
ATATGATCACATAATATTTATATACATATATGTAAGGAAAACGTCTGTAG
AAGGCACTTTAGATACCAGTATGGGAAGTATGTTCAAACTGACGCTTACT
TAGCAGACATCGCTGAACTGCAGGAGAAAGTTTTTGTTTTTGGTTTTTTT
TGTTTTTTGGTTTTTN
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGGAATACCGAATTG
CTGAGAAGCACCTAAAGAAATGTTCAACATCCTTAGTCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTTACACCAGTCAGAATGGCTAA
GATTTAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGCTGGTGGGATTGCAATCTGGTACAACCATTCTGG
AAATCAGTTTGGTGGTTCCTCAGAAAACTGGACACAGTACTACCTGAGGA
CCCACTAATACCACTCCTGGGCATATACTCAGAAGATGTTCCAACATGTA
ATAAGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGTCTCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATTTATACAATGGAGTACTACTCAGCTATTAAAAACAATG
AATTTATTATGAAATTCTTAGGCAAGTGGATGAAACTAGAAAATATCATC
CTGTGTGAGGTAACTCAATCACAAAAGAACACACATGATATGTACTCACT
GATAAATGGATATTAGCCCAGAAACTTAGACTACCCAAGATACAATTTGC
AAAACACATGAAACTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_d11.b1 MSMg01no151_d11.b1 CHROMAT_FILE:
MSMg01no151_d11.b1 PHD_FILE: MSMg01no151_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:58 2005
         (659 letters)



>mm_chr12_59509612_59510668
          Length = 1057

 Score = 1180 bits (610), Expect = 0.0
 Identities = 643/654 (98%), Gaps = 2/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaagctgcacactaattgaggatgacaacatggatccattttctttgtatgag 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaagctg-agactaattgaggatgacaacatggatccattttctttgtatgag 263

                                                                       
Query: 65  cctgtgagcagttggcttctcaggggcccctatgctgtgaagacacaaaagcgaataact 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctgtgatcagttggcttctcaggggcccctatgctgtgaagacacaaaagcgaataact 323

                                                                       
Query: 125 gtggacaagtgtagtcggtagcaggtgcctgtcctgaggggaatgagtgcctagaaggag 184
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 gtggacaagtgtagtcggtggcaggtgcctgtcctgaggggaacgagtgcctagaaggag 383

                                                                       
Query: 185 gtgtgattcagataaaatgcatggatgacttaagaggaacaagtagattatagaattaag 244
           |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgtgattcagatacaatgcatggacgacttaagaggaacaagtagattatagaattaag 443

                                                                       
Query: 245 atgaaaagcaataaagtaaaatgcaaactcacaggaaaaaatcaagtcaattcagtcctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgaaaagcaataaagtaaaatgcaaactcacaggaaaaaatcaagtcaattcagtcctg 503

                                                                       
Query: 305 ctgatcatctaaaaagagatgataggtgatcaaataatactgagagcccttaatagaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgatcatctaaaaagagatgataggtgatcaaataatactgagagcccttaatagaaaa 563

                                                                       
Query: 365 tatatacttaccgacaaaaaaattagatatttccaaattatattaaatcaacaaagctgt 424
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatatacttag-gataaaaaaattagatatttccaaattatattaaatcaacaaagctgt 622

                                                                       
Query: 425 gttaatcctttccagctgttcttcaatatatctcagctatacatacacagcctagtatga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gttaatcctttccagctgttcttcaatatatctcagctatacatacacagcctagtatga 682

                                                                       
Query: 485 tacgcatcatattcatacatatgatcacataatatttatatacatatatgtaaggaaaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tacgcatcatattcatacatatgatcacataatatttatatacatatatgtaaggaaaac 742

                                                                       
Query: 545 gtctgtagaaggcactttagataccagtatgggaagtatgttcaaactgacgcttactta 604
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 743 gtctgtagaaggcactttagataccagtatggggagtatgttcaaactgacgcttactta 802

                                                                 
Query: 605 gcagacatcgctgaactgcaggagaaagtttttgtttttggttttttttgtttt 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcagacatcgctgaactgcaggagaaagtttttgtttttggttttttttgtttt 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1057
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1047
Effective search space:   679503
Effective search space used:   679503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)