BAC Information

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BAC

Clone NameMSMg01-151I07
Chromosome12 (Build37)
Map Location 92,533,885 - 92,619,289
singlet/doubletdoublet
Overlap gene4930534B04Rik
Upstream geneNrxn3, LOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik, 5430427M07Rik
Downstream geneTshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I07.T7 (MSMg01no151_i07.b1)MSMg01-151I07.TJ (MSMg01no151_i07.g1)
ACCAG353660AG353661
length775725
length of high quality
(start - end)
117 (48 - 164)579 (83 - 661)
definitionCHROMAT_FILE: MSMg01no151_i07.b1 PHD_FILE: MSMg01no151_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:21 2005CHROMAT_FILE: MSMg01no151_i07.g1 PHD_FILE: MSMg01no151_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,619,174 - 92,619,289)(92,533,885 - 92,534,463)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGAATTTTTGAGTTAGCAAGATGTAAGTCTAGTTGGTTAATGCAC
TCTAGGAATTCTCATCTACACAAATTGATACATTTGGAACTCGTATAAAG
ATGCTTCAGGATAGATTCACTATTACACCTTTCATCATGTTAGGGGGCTC
ATTAGACTGGCTTGAATATAGTCATGCTCTTTAAAGTCTGTTTTCCTATG
TAACTCTGTATTGTTAAACGGTCATACAAATACTGGAGGCAAGGTTTGGA
ATACAGCCCAGGTTGATCTGGAACTCATACCCCCTGCTGGAGCCAGTGCT
AGGATTTAAGGTGTGTTTTTCCTACCTGGGTCACCTACCTGCGCCACTGT
CTTATCTGCCTGCACCCCCCCCCTCCGAGGCTAACCGCCCATACCCACCC
TTCCGTATCCCTCCAACCGCCCCACTCGTTCCCCATAACCCCTATATTCG
CCCCCTTATCCCCGTTTCCTCCCATTTCTCCTTGCCCCGTTTCCATTTCC
CCCTTCCCTCCTTCTTCATCCCGCGTTCGTATTATGCTTTCCCCCCTCCG
TTTCCCCCCCGATCCCCTTGTTTCCCCATCCTTACCACTTCCCCTACCCC
ATACCCGCCCCCCCATTTCATTCCCGTTCCCCCCCCTTTTCCCCCCCTTT
CTTCCCCCGCCTTTCCCCCCCTTGTCTCTTCCCATCCTGTTACCGCCCCC
CCCCATTTCCCCTGTCCCCCACCTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCCCACCTGAGTGTCTCAAGACCAC
TGACTGAAGAACAAAGTCAATAAATGTGTTTAAAGGTTCTGCAAAGCAAG
TGCCTTTCCAGTACCACTGTGAGCATGCAGAGCGACTTCTGAACACGTAT
GACAGCAGGCATCCTGGCCTGCAGAGCATGTCATGTAGCTGAGCTATGAA
ATCTCATTGCCCAACAGGAGGCACATTCTGATTTAGAGAGCACAGAGGGA
GGGGCAGTAAGAAACATATCCACCCTTATCCAGTGCACATAAAATGACCA
CTTAAAGTTACTCAACTTTAGATATCACAAGCTCCCAATTGCTACTAGGG
TTAATGGACTACAAAACACTATACCTAAAAAGTAAGCCTCATCTGTGGCT
AAAAGGAGCCAGGCAGCATCCTGACAACAAGAGCAAAGGCAGTGATGTAT
TCAAAGTAACCTAAACATGCAAAGGTCTGTTCAATCTATTTTCTCCTTCC
TCCTTATTCTCCAGNGCCTCCTTGAACAGAATTAAGCTCCCGGGAAATTT
TATCTTACACATCCAGTATACTTGTTCACTGTTCTGCTGAGAGAGATAAG
TACAAAGTCAGAGCAGCAGTCAGCAAAACACATTGTCCCAGTGGGAACTG
GGTCTGGCTTTTCTGTGAGCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i07.b1 MSMg01no151_i07.b1 CHROMAT_FILE:
MSMg01no151_i07.b1 PHD_FILE: MSMg01no151_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:21 2005
         (117 letters)



>mm_chr12_92618973_92619489
          Length = 517

 Score =  201 bits (104), Expect = 1e-56
 Identities = 113/116 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcaggaatttttgagttagcaagatgtaagtctagttggttaatgcactctaggaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaattcaggaatttttgagttagcaagatgtaagtctagttggttaatgcactctaggaa 258

                                                                   
Query: 62  ttctcatctacacaaattgatacatttggaactcgtataaagatgcttcaggatag 117
           |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 257 ttcttacctacacaaattgacacatttggaactcgtataaagatgcttcaggatag 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no151_i07.g1 MSMg01no151_i07.g1 CHROMAT_FILE:
MSMg01no151_i07.g1 PHD_FILE: MSMg01no151_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:21 2005
         (579 letters)



>mm_chr12_92533685_92534663
          Length = 979

 Score = 1052 bits (544), Expect = 0.0
 Identities = 570/579 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagtgtctcaagaccactgactgaagaacaaagtcaataaatgtgtttaaaggttctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtgtctcaagaccactgactgaagaacaaagtcaataaatgtgtttaaaggttctgc 260

                                                                       
Query: 61  aaagcaagtgcctttccagtaccactgtgagcatgcagagcgacttctgaacacgtatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcaagtgcctttccagtaccactgtgagcatgcagagcgacttctgaacacgtatga 320

                                                                       
Query: 121 cagcaggcatcctggcctgcagagcatgtcatgtagctgagctatgaaatctcattgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcaggcatcctggcctgcagagcatgtcatgtagctgagctatgaaatctcattgccc 380

                                                                       
Query: 181 aacaggaggcacattctgatttagagagcacagagggaggggcagtaagaaacatatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaggaggcacattctgatttagagagcacagagggaggggcagtaagaaacatatcca 440

                                                                       
Query: 241 cccttatccagtgcacataaaatgaccacttaaagttactcaactttagatatcacaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccttatccagtgcacataaaatgaccacttaaagttactcaactttagatatcacaagc 500

                                                                       
Query: 301 tcccaattgctactagggttaatggactacaaaacactatacctaaaaagtaagcctcat 360
           ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 501 tcccaattgctactagggttaatgggctacaaaacactacacctaaaaagtaagcctcat 560

                                                                       
Query: 361 ctgtggctaaaaggagccaggcagcatcctgacaacaagagcaaaggcagtgatgtattc 420
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ctgcggctaaaaggagccaggcagcatcctgacaacaagagcaaaggcagcgatgtattc 620

                                                                       
Query: 421 aaagtaacctaaacatgcaaaggtctgttcaatctattttctccttcctccttattctcc 480
           | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 agagtaacctaaacacgcaaaggtctgttcaatctattctctccttcctccttattctcc 680

                                                                       
Query: 481 agngcctccttgaacagaattaagctcccgggaaattttatcttacacatccagtatact 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgcctccttgaacagaattaagctcccgggaaattttatcttacacatccagtatact 740

                                                  
Query: 541 tgttcactgttctgctgagagagataagtacaaagtcag 579
           |||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 tgttcactgttctgctgagagagataagtagaaagtcag 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)