BAC Information

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BAC

Clone NameMSMg01-151I11
Chromosome12 (Build37)
Map Location 49,578,051 - 49,578,202
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I11.T7 (MSMg01no151_i11.b1)MSMg01-151I11.TJ (MSMg01no151_i11.g1)
ACCAG353668AG353669
length743787
length of high quality
(start - end)
152 (169 - 320)194 (75 - 268)
definitionCHROMAT_FILE: MSMg01no151_i11.b1 PHD_FILE: MSMg01no151_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:21 2005CHROMAT_FILE: MSMg01no151_i11.g1 PHD_FILE: MSMg01no151_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXCTAATCCCAGAACACCGCGGAATT
CCAGTTCCTTAATCTGACTAATTTTCCTTCCAGGGAAATGACTCTCAATT
GTTTCAACCCACTTACTCAGAAGATTCACTTTCTACTCCTAAAATACCCA
TCTATAACTCGTATCTCAGTTGGCATCAGTACCAAACCATACCGAAATGC
TTGAGAGAAAGAATGGAAAATCACAATGTCACAATTCCTTTGTCAATTCT
GATACACAATCAAGCTGTAATATCTAACTAATATCGTTTCTTGATTATTT
CAACAACCACTAATATATCTGATTTATACAAACATAAAAGACTTCAAACC
AAATTAATCATATCATATACAGAGAGCACTACATACTTACTACAGAAAAA
TTCATCAAAGTGATATCCCAATTCTAATCATCGATGCACCACACAAAACT
GTGCTCATGTTCCTCCCATACACCCTACCGTAGCCACAATACCATATTGA
CCTTCCCTTAACCCCTATCCGCCCCCCACTACCTACCTCTCACCTATCCC
ACCGGCCACTTATTCAGCCCCATCTCTATTAATACCCCCGACCGTACCCC
CCCTTCTCTCTTATCCCATACCGTCCCTCTCCTCCCCCATTCCCTCCCCC
TCTGCCACCCCGTCCGCCCTTTCCCCACCTTTATCCCCCCCTGTCCACCC
TTCCTTCCCATTTTTTCCCACCCCCCATGACCCATACCCCCTT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCCATTGATATTAAGAGATATTAAG
GAAAAGTAATTGTTGCTTCCTTTTATTTTTGTTGTTAGAGTTGGCATTCT
GTTTTTGTGGCTGTCTTCTTTTTGGTTTGTTGAGGGATTACTTTCTTGCT
TTTTCTAGGGCGTGATTTCAGTCCTTGTATTGTTTTTGTTGTTGTTGTTG
TTTGTTTTTTTTTTTTTTCTGCTACTACCCCTCGAACGCCTGGATTCCTG
GACCGATAACGCGCGCATTTTTTTTTGTCCTGCCCCACCCTGCCTTCTCC
ATCTACGCCCATCTCAGAATTTGCCTACCCATCGCACCCTGCCCCCCCAT
TTGTGTCCTCCCCCCGCCCGCATATACTCTGCCCAGCCTCTCTCCGGTTC
TCCTAGTCTCCTGCCGCCACCCCCCGGTGCCCTTCTCCATTTTCCTGCCC
CCTCCCCGCCCTCTCCCACCTTTCTCCCCTCACCTGCTCCTACCCCCCCT
CCCCTTTCCTTCTCTCTCCCCCTCTTCGCCCCCCCCCCTTTACCCCTCCC
GCCACCTCCTCCTCTCTCCCCCCCCCCACCTCTTCTTCCCCCCCCCCTCT
CCCCCTTCTTCCCTCCGTCCTTTTTCCCCCTTCTCCCCTCCCCCCACTCC
TTTAATCCCCCCCTCCTCCTTCCCCACTTCTCCCCCCCCTCCCCCCTCCC
CCCCAATTCCCCCCCACCCCTATTCTCTTCCCGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i11.b1 MSMg01no151_i11.b1 CHROMAT_FILE:
MSMg01no151_i11.b1 PHD_FILE: MSMg01no151_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:21 2005
         (152 letters)



>mm_chr12_49577851_49578402
          Length = 552

 Score =  248 bits (128), Expect = 2e-70
 Identities = 146/152 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttggcatcagtaccaaaccataccgaaatgcttgagagaaagaatggaaaatcacaatg 60
           ||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||
Sbjct: 201 gttggcatcagcaccaaaccataccgaaatgtttgagagaaagaacggaaaaccacaatg 260

                                                                       
Query: 61  tcacaattcctttgtcaattctgatacacaatcaagctgtaatatctaactaatatcgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 261 tcacaattcctttgtcaattctgatacacaatcaagctgtaatatctaagtaatatcatt 320

                                           
Query: 121 tcttgattatttcaacaaccactaatatatct 152
           ||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgattatttcaacaaccactaatatatct 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)